Abstract
The triplication of a region of chromosome 21 around D21S55 in 21q22.2–22.3 has been involved in the main features of Down syndrome including mental retardation (Down syndrome chromosome region: DCR). To improve the physical map of this region, we screened yeast artificial chromosome (YAC) libraries with ETS2 and ERG sequences. Five selected clones were analyzed by AluPCR, pulsed-field gel electrophoresis, and in situ hybridization. A 1.2-Mg contig, encompassing the protooncogenes ETS2 and ERG, was identified, its restriction map established and compared to the genomic map. ERG is distal to D21S55 and proximal to ETS2. ERG and ETS2 genes are 400 kb apart and in opposite orientations. The contig contains the distal boundary and part of the DCR. Three putative HTF islands were identified.
Similar content being viewed by others
Log in or create a free account to read this content
Gain free access to this article, as well as selected content from this journal and more on nature.com
or
References
Lejeune J, Gautier M, Turpin R: Etudes chromosomiques somatiques de neuf enfants mongoliens. C R Hebd Séances Acad Sci 1959;248:409–411
Aula P, Leisti J, Von Koskull H: Partial trisomy 21. Clin Genet 1973;4:241–251
Poissonnier M, Saint-Paul B, Dutrillaux B, Chassaigne M, Gruyer P, de Blignières-Strouk G: Trisomie 21 partielle (21q21→21q22.2). Ann Génét (Paris) 1976;19:69–73
Mattei JF, Mattei MG, Beateman MA, Giraud F: Trisomy 21 for the region 21q22.3: Identification by high resolution R banding patterns. Hum Genet 1981;56:409–411
Rahmani Z, Blouin JL, Créau-Goldberg N, Watkins PC, Mattei JF, Poissonnier M, Prieur M, Chettouh, Z, Nicole A, Aurias A, Sinet PM, Delabar JM: Critical role of the D21S55 region on chromosome 21 in the pathogenesis of Down syndrome. Proc Natl Acad Sci USA 1989;86:5958–5962
Rahmani Z, Blouin JL, Créau-Goldberg N, Watkins PC, Mattei JF, Poissonnier M, Prieur M, Chettouh Z, Nicole A, Aurias A, Sinet PM, Delabar JM: Down syndrome critical region around D21S55 on proximal 21q22.3. Am J Med Genet 1990;suppl 7:98–103.
Carritt B, Litt M: Report of the committee on the genetic constitution of chromosomes 20 and 21. Cytogenet Cell Genet 1989;51:358–371
Sinet PM, Rahmani Z, Théophile D, Chettouh Z, Blouin JL, Prieur M, Noel B, Pangalos C, Mattei JF, Delabar JM: Molecular definition of 7 minimal regions for 23 features of Down syndrome on chromosome 21. Am J Hum Genet 1991;suppl 49:A1528.
Korenberg JR, Bradley C, Disteche CM: Down syndrome: molecular mapping of the congenital heart disease and duodenal stenosis. Am J Hum Genet 1992;50:294–302
McCormick MK, Schinzel A, Petersen MB, Stetten G, Driscoll DJ, Cantu ES, Tranebjaerg L, Mikkelsen M, Watkins PC, Antonorakis SE: Molecular genetic approach to the characterization of the ‘Down syndrome Region’ of Chromosome 21. Genomics 1989;5:325–331
Burmeister M, Suwon K, Roydon Price E, de Lange T, Tantravahi U, Myers RM, Cox DR: A map of the distal region of the long arm of human chromosome 21 constructed by radiation hybrid mapping and pulsed-field gel electrophoresis. Genomics 1991;9:19–30
Burke DT, Carle GF, Olson MV: Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 1987;236:806–812
Blouin JL, Aurias A, Créau-Goldberg N, Apiou F, Alcaïde-Loridan C, Bruel A, Prieur M, Kraus J, Delabar JM, Sinet PM: Cytogenetic and molecular analysis of a de novo tandem duplication of chromosome 21. Hum Genet 1991;88:167–174
Gardiner K, Laas W, Patterson D: Fractionation of large mammalian DNA restriction fragments using vertical pulsed gradient gel electrophoresis. Somat Cell Mol Genet 1986;12:185–195
Crété N, Delabar JM, Sinet PM, Créau-Goldberg N: Accurate evaluation of the sizes of DNA fragments (from 30 to 4700 kb) in pulsed field gel electrophoresis. Biotechniques 1991;11:711–717
Kozak CA, Lawrence JB, Ruddle FH: A sequential staining technique for the chromosomal analysis of interspecific mouse/hamster and mouse/human somatic cell hybrids. Exp Cell Res 1977;105:109–117
Cox DR, Shimizu N: Report of the committee on the genetic constitution of chromosome 21. Cytogenet Cell Genet 1991;55:235–244
Blouin JL, Rahmani Z, Chettouh Z, Prieur M, Fermanian J, Poissonnier M, Leonard C, Nicole A, Mattei JF, Sinet PM, Delabar JM: Slot blot method for the quantification of DNA sequences and mapping of chromosome rearrangements: Application to chromosome 21. Am J Hum Genet 1990;46:518–526
Albertsen HM, Abderrahim H, Cann HM, Dausset J, Le Paslier D, Cohen D: Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc Natl Acad Sci USA 1990;87:4256–4260
Browstein BH, Silverman GA, Little RD, Bluke DT, Korsmeyer SJ, Schlessinger D, Olson MV: Isolation of single-copy human genes from a library of yeast artificial chromosome clones. Science 1989;244:1348–1351
Mavrothalassitis GJ, Watson DK, Papas TS: Molecular and functional characterization of the promoter of ETS2, the human c-ets-2 gene. Proc Natl Acad Sci USA 1990;87:1047–1051
Patterson D: Report of the Second International Workshop on Human chromosome 21. Cytogenet Cell Genet 1991;57:167–174
Rao VN, Papas TS, Reddy SP: ERG, a human ETS-related gene on the chromosome 21: alternative splicing, polyadenylation, and translation. Science 1987;237:635–639
Sherman F, Fink GR, Hicks JB: Method in yeast genetics. Cold Spring Harbor Lab, Cold Spring Harbor NY 1986.
Carle GF, Olson MV: An electrophoretic karyotype for yeast. Proc Natl Acad Sci USA 1985;82:3756–3760
Riley J, Butler R, Ogilvie D, Finniear R, Jenner D, Powell S, Anand R, Smith JC, Markham AF: A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosomes (YAC) clones. Nucleic Acids Res 1990;18:2887–2890
Cotter FE, Hampton GM, Nasipuri S, Bodmer WF, Young BD: Rapid isolation of human chromosome-specific DNA probes from a somatic cell hybrid. Genomics 1990;7:257–263
Breukel C, Wijnen J, Tops C, Van der Klift H, Dauwerse H, Khan PM: Vector-Alu PCR: A rapid step in mapping cosmids and YACs. Nucleic Acids Res 1991;18:3097.
Feinberg AP, Volgelstein B: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 1983;132:6–13; Addendum: Anal Biochem 1984;137:266–267
Nelson DL, Ledbetter SA, Corbo L, Victoria MF, Ramirez-Solis R, Webster TD, Ledbetter DH, Caskey CT: Alu polymerase chain reaction: a method for rapid isolation of human specific sequences from complex DNA sources. Proc Natl Acad Sci USA 1989;86:6686–6690
Anand R, Riley JH, Butler R, Smith JC, Markham AF: A 3.5 genome equivalent multi-access YAC library: Construction, characterisation, screening and storage. Nucleic Acids Res 1990;18:1951–1956
Viegas-Péquignot E, Dutrillaux B: Une méthode simple pour obtenir des prophases et des prométaphases. Ann Génét (Paris) 1978;21:122–124
Zhang FR, Heilig R, Thomas G, Aurias A: A one-step efficient and specific non-radioactive non-fluorescent method for in situ hybridization of banded chromosomes. Chromosoma 1990;99:436–439
Watkins PC, Watkins PA, Hoffman N, Stanislovitis P: Isolation of single-copy probes detecting DNA polymorphism from a cosmid library of chromosome 21. Cytogenet Cell Genet 1985;40:773–774
Boulukos KE, Pognonec P, Begue A, Galibert F, Gesquières JC, Stehelin D, Ghysdael J: Identification in chickens of an evolutionarily conserved cellular ets-2 gene (c-ets-2) encoding molecular proteins related to the products of the c-ets protooncogene. EMBO J 1988;7:697–705
Landsman D, McBride OW, Soares N, Crippa MP, Srikantha T, Bustin M: Chromosomal protein HMG14: Identification, characterization, and chromosome localisation of a functional gene from the large human multigene family. J Biol Chem 1989;264:3421–3427
Gardiner K, Horisberger M, Kraus J, Tantravahi U, Korenberg J, Rao V, Reddy S, Patterson D: Analysis of human chromosome 21: correlation of physical and cytogenetic maps; gene and CpG island distributions. EMBO J 1990;9:25–34.
Butler R, Ogilvie DJ, Elvin P, Riley JH, Finniear RS, Slynn G, Morten JEN, Markham AF, Anand R: Walking, cloning, and mapping with Yeast Artificial Chromosomes: A contig encompassing D21S13 and D21S16. Genomics 1992;12:42–51
Bird AP: CpG-rich islands and the function of DNA methylation. Nature 1986;321:209–213
Yaspo M-L, Crété N, Chettouh Z, Blouin JL, Rahmani Z, Stehelin D, Sinet P-M, Créau-Goldberg N, Delabar J-M: New chromosomes 21 DNA markers isolated by pulsed field gel electrophoresis from an ETS2 containing Down syndrome chromosomal region. Hum Genet, in press.
Bosselut R, Duvall JF, Gégonne A, Bailly M, Hémar A, Brady J, Ghysdael J: The product of the c-ets-1 proto-oncogene and the related Ets-2 protein act as transcriptional activators of the long terminal repeat of human T cell leukemia virus HTLV-1. EMBO J 1990;9:3137–3144
Wasylyk B, Wasylyk C, Flores P, Begue A, Leprince D, Stéhelin D: The c-ets proto-oncogenes encode transcription factors that cooperate with c-Fos and c-Jun for transcriptional activation. Nature 1990;346:191–193
Reddy ESP, Rao VN: Erg, an ets-related gene, codes for sequence-specific transcriptional activators. Oncogene 1991;6:2285–2289
Bhat NK, Fisher RJ, Fujiwara S, Ascione R, Papas TS: Temporal and tissue-specific expression of mouse ets genes. Proc Natl Acad Sci USA 1987;84:3161–3165
Amouyel Ph, Gégonne A, Delacourte A, Défossez A, Stéhelin D: Expression of ETS protooncogenes in astrocytes in human cortex. Brain Res 1988;447:149–153
Sacchi N, Cheng SV, Tanzi RE, Gusella JF, Drabkin HA, Patterson, Haines JH, Papas TS: The ETS genes on chromosome 21 are distal to the breakpoint of the acute myelogenous leukemia translocation (8;21). Genomics 1988;3:110–116
Acknowledgements
We are grateful to Françoise Le Dez for her contribution to this work, to Z. Chettouh for technical assistance, to M. L. Yaspo for sharing unpublished data, to
J. M. Delabar for helpful discussion, to D. Le Paslier and D. Cohen for providing the YACs of the CEPH library, to I. Chumakov for providing D21S3 screening data of the CEPH library, to D. Patterson for providing the YACs of the Chromosome 21 Joint YAC Screening Effort and the hybrids ACEM, GA9-3, 1881c-13b and 9542-5c, to P. Watkins for the probe D21S55, to D. Stéhelin for the ETS2 cDNA, to M. Bustin for the HMG14 probe and to M. Poissonnier who referred patient FG.
This work was financially supported by Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale, Ministère de la Recherche et de la Technologie, Faculté Necker, Université Paris V, N.C. has been supported by the Association Française contre les Myopathies, and Association de Recherche sur le Cancer.
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Crété, N., Gosset, P., Théophile, D. et al. Mapping the Down Syndrome Chromosome Region. Eur J Hum Genet 1, 51–63 (1993). https://doi.org/10.1159/000472387
Received:
Revised:
Accepted:
Issue date:
DOI: https://doi.org/10.1159/000472387
Key Words
This article is cited by
-
Molecular genetic characterization and comparative mapping of the humanPCP4 gene
Somatic Cell and Molecular Genetics (1996)
-
A High-resolution map of 1.6 Mb in the Down syndrome region: a new map between D21S55 and ETS2
Mammalian Genome (1995)