TABLE 3 Summary of Changes in mRNA Expression Compared with Fresh Tissue after Differing Intervals of Fixation in 10% Buffered Formalin

From: Effect of Duration of Fixation on Quantitative Reverse Transcription Polymerase Chain Reaction Analyses

Fixation Timea

Normal (N = 2)

Dysplasia (N = 3)

Carcinoma (N = 4)

Mean

MMP-1

0 h

1.00

1.00

1.00

1.00

24 h

0.52

2.27

1.60

1.47

48 h

0.51

9.29

4.14

4.65

72 h

4.02

4.54

13.56

7.37

1 week

8.92

3.07

1.80

4.60

 

EGFR

0 h

1.00

1.00

1.00

1.00

24 h

1.50

0.78

0.65

0.98

48 h

1.43

0.52

0.76

0.91

72 h

1.82

0.49

1.01

1.11

1 week

1.38

0.62

0.98

0.99

 

p21

0 h

1.00

1.00

1.00

1.00

24 h

0.56

1.22

1.04

0.94

48 h

1.13

0.69

0.91

0.91

72 h

6.01

0.73

0.87

2.54

1 week

0.47

0.75

0.80

0.68

 

VEGF

0 h

1.00

1.00

1.00

1.00

24 h

0.86

2.16

4.98

2.67

48 h

3.31

2.23

13.89

6.48

72 h

10.21

0.60

36.44

15.75

1 week

0.19

1.31

10.74

4.08

  1. Results are the mean of triplicate runs. All points were measured relative to β-Gus and normalized to fresh tissue RNA. No change = 1. MMP-1, matrix metalloproteinase; EGFR, epidermal growth factor receptor; VEGF, vascular endothelial growth factor.
  2. a0 h = fresh, unfixed.