A plan to identify and integrate normal structural variation into the human genome sequence.
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References
IHGSC. Initial sequencing and analysis of the human genome. Nature 409, 860β 921 (2001).
Venter, J. C. et al. The sequence of the human genome. Science 291, 1304β 1351 (2001).
Collins, F. S., Green, E. D., Guttmacher, A. E. & Guyer, M. S. A vision for the future of genomics research. Nature 422, 835β 847 (2003).
IHMC. A haplotype map of the human genome. Nature 437, 1299β 1320 (2005).
Hinds, D. A. et al. Whole-genome patterns of common DNA variation in three human populations. Science 307, 1072β 1079 (2005).
Weber, J. L. et al. Human diallelic insertion/deletion polymorphisms. Am. J. Hum. Genet. 71, 854β 862 (2002).
Bhangale, T. R., Rieder, M. J., Livingston, R. J. & Nickerson, D. A. Comprehensive identification and characterization of diallelic insertionβdeletion polymorphisms in 330 human candidate genes. Hum. Mol. Genet. 14, 59β 69 (2005).
Mills, R. E. et al. An initial map of insertion and deletion (INDEL) variation in the human genome. Genome Res. 16, 1182β 1190 (2006).
Feuk, L., Carson, A. R. & Scherer, S. W. Structural variation in the human genome. Nature Rev. Genet. 7, 85β 97 (2006).
Freeman, J. L. et al. Copy number variation: new insights in genome diversity. Genome Res. 16, 949β 961 (2006).
Sharp, A. J., Cheng, Z. & Eichler, E. E. Structural variation of the human genome. Annu. Rev. Genom. Hum. Genet. 7, 407β 442 (2006).
Iafrate, A. J. et al. Detection of large-scale variation in the human genome. Nature Genet. 36, 949β 951 (2004).
Sebat, J. et al. Large-scale copy number polymorphism in the human genome. Science 305, 525β 528 (2004).
Tuzun, E. et al. Fine-scale structural variation of the human genome. Nature Genet. 37, 727β 732 (2005).
Hinds, D. A., Kloek, A. P., Jen, M., Chen, X. & Frazer, K. A. Common deletions and SNPs are in linkage disequilibrium in the human genome. Nature Genet. 38, 82β 85 (2006).
Conrad, D. F., Andrews, T. D., Carter, N. P., Hurles, M. E. & Pritchard, J. K. A high-resolution survey of deletion polymorphisms in the human genome. Nature Genet. 38, 75β 81 (2006).
McCarroll, S. A. et al. Common deletion polymorphisms in the human genome. Nature Genet. 38, 86β 92 (2006).
Redon, R. et al. Global variation in copy number in the human genome. Nature 444, 444β 454 (2006).
Khaja, R. et al. Genome assembly comparison identifies structural variants in the human genome. Nature Genet. 38, 1413β 1418 (2006).
Wilson, E. B. The sex chromosomes. Arch. Mikrosk. Anat. Entwicklungsmech 77, 249β 271 (1911).
Cooley, T. B. & Lee, P. A series of cases of splenomegaly in children with anemia and peculiar bone changes. Trans. Am. Pediatr. Soc. 37, 29 (1925).
Levine, P., Katzin, E. M. & Burnham, L. Isoimmunization in pregnancy: its possible bearing on the etiology of erythroblastosis foetalis. J. Am. Med. Assoc. 116, 825β 827 (1941).
Deeb, S. S. The molecular basis of variation in human color vision. Clin. Genet. 67, 369β 377 (2005).
Wagner, F. F. & Flegel, W. A. The molecular basis of the Rh blood group phenotypes. Immunohematol. 20, 23β 36 (2004).
Fucharoen, S. & Winichagoon, P. Thalassemia and abnormal hemoglobin. Int. J. Hematol. 76 (Suppl. 2), 83β 89 (2002).
Lupski, J. R. Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits. Trends Genet. 14, 417β 422 (1998).
Stankiewicz, P. & Lupski, J. R. Genomic architecture, rearrangements and genomic disorders. Trends Genet. 18, 74β 82 (2002).
Lupski, J. R. & Stankiewicz, P. Genomic disorders: molecular mechanisms for rearrangements and conveyed phenotypes. PLoS Genet. 1, e49 (2005).
Duncan, I. W. Transvection effects in Drosophila. Annu. Rev. Genet. 36, 521β 556 (2002).
Jakobsson, J. et al. Large differences in testosterone excretion in Korean and Swedish men are strongly associated with a UDP-glucuronosyl transferase 2B17 polymorphism. J. Clin. Endocrinol. Metab. 91, 687β 693 (2006).
Park, J. et al. Deletion polymorphism of UDP-glucuronosyltransferase 2B17 and risk of prostate cancer in African American and Caucasian men. Cancer Epidemiol. Biomarkers Prev. 15, 1473β 1478 (2006).
Gonzalez, E. et al. The Influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility. Science 307, 1434β 1440 (2005).
Fellermann, K. et al. A chromosome 8 gene-cluster polymorphism with low human beta-defensin 2 gene copy number predisposes to Crohn disease of the colon. Am. J. Hum. Genet. 79, 439β 448 (2006).
Aitman, T. J. et al. Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans. Nature 439, 851β 855 (2006).
Buckland, P. R. Polymorphically duplicated genes: their relevance to phenotypic variation in humans. Ann. Med. 35, 308β 315 (2003).
Lupski, J. R. et al. DNA duplication associated with CharcotβMarieβTooth disease type 1A. Cell 66, 219β 232 (1991).
Locke, D. P. et al. Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome. Am. J. Hum. Genet. 79, 275β 290 (2006).
Wirtenberger, M., Hemminki, K. & Burwinkel, B. Identification of frequent chromosome copy-number polymorphisms by use of high-resolution single-nucleotide-polymorphism arrays. Am. J. Hum. Genet. 78, 520β 522 (2006).
Sharp, A. J. et al. Segmental duplications and copy-number variation in the human genome. Am. J. Hum. Genet. 77, 78β 88 (2005).
Rozen, S. et al. Abundant gene conversion between arms of massive palindromes in human and ape Y chromosomes. Nature 423, 873β 876 (2003).
Repping, S. et al. High mutation rates have driven extensive structural polymorphism among human Y chromosomes. Nature Genet. 38, 463β 467 (2006).
Schmutz, J. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature 431, 268β 274 (2004).
Eichler, E. E. Widening the spectrum of human genetic variation. Nature Genet. 38, 9β 11 (2006).
Bentley, D. R. Whole-genome re-sequencing. Curr. Opin. Genet. Dev. 16, 545β 552 (2006).
Lackner, C., Cohen, J. C. & Hobbs, H. H. Molecular definition of the extreme size polymorphism in apolipoprotein(a). Hum. Mol. Genet. 2, 933β 940 (1993).
Rao, Y. et al. Duplications and defects in the CYP2A6 gene: identification, genotyping, and in vivo effects on smoking. Mol. Pharmacol. 58, 747β 755 (2000).
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We thank R. Spielman and three anonymous reviewers for helpful comments.
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Reprints and permissions information is available at www.nature.com/reprints. Correspondence and requests for materials should be addressed to E.E.E. (eee@gs.washington.edu).
Author Contributions E.E.E., D.A.N., D.A., A.F., J.R.L. and S.T.S. wrote the manuscript. A.M.B, L.D.B., N.P.C., D.M.C., M.G., C.L., J.C.M., J.K.P., J.S., D.S., D.V. and R.H.W. contributed to the plan design and provided comments and suggestions during preparation of the manuscript.
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The Human Genome Structural Variation Working Group. Completing the map of human genetic variation. Nature 447, 161β165 (2007). https://doi.org/10.1038/447161a
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DOI: https://doi.org/10.1038/447161a
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