Abstract
Cornelia de Lange Syndrome (CdLS) is a multiple congenital anomaly syndrome characterized by a distinctive facial appearance, malformations of the upper limbs, and delay in growth and development. Mutations in NIPBL are associated with CdLS in 27â56% of cases and have been reported as point mutations, small insertions and deletions in coding regions, regulatory regions and at splice junctions. All previous studies used PCR-based exon-scanning methodologies that do not allow detection of large genomic rearrangements. We studied the relative copy number of NIPBL exons in a series of 50 CdLS probands, negative for NIPBL mutations, by multiplex ligation-dependent probe amplification (MLPA). In a single patient, we found a 5.2âkb deletion encompassing exons 41â42 of NIPBL. Our studies indicate that large NIPBL rearrangements do occur in CdLS but are likely to be infrequent events.
Similar content being viewed by others
Log in or create a free account to read this content
Gain free access to this article, as well as selected content from this journal and more on nature.com
or
References
Gorlin RJ, Cohen MM, Hennekam RC : Syndromes of the Head and Neck (4th edn.). Oxford Medical Press: New York, 2001, pp 372â377.
Krantz ID, McCallum J, DeScipio C et al: Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-B. Nat Genet 2004; 36: 631â635.
Tonkin ET, Wang TJ, Lisgo S, Bamshad MJ, Strachan T : NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome. Nat Genet 2004; 36: 636â641.
Rollins RA, Morcillo P, Dorsett D : Nipped-B, a Drosophila homologue of chromosomal adherins, participates in activation by remote enhancers in the cut and Ultrabithorax genes. Genetics 1999; 152: 577â593.
Rollins RA, Korom M, Aulner N, Martens A, Dorsett D : Drosophila nipped-B protein supports sister chromatid cohesion and opposes the stromalin/Scc3 cohesion factor to facilitate long-range activation of the cut gene. Mol Cell Biol 2004; 24: 3100â3111.
Musio A, Selicorni A, Focarelli ML et al: X-linked Cornelia de Lange syndrome owing to SMC1L1 mutations. Nat Genet 2006; 38: 528â530.
Bhuiyan ZA, Klein M, Hammond P et al: Genotype-phenotype correlations of 39 patients with Cornelia de Lange syndrome: the Dutch experience. J Med Genet 2006; 43: 568â575.
Bhuiyan ZA, Zilfalil BA, Hennekam RC : A Malay boy with the Cornelia de Lange syndrome: clinical and molecular findings. Singapore Med J 2006; 47: 724â727.
Borck G, Zarhrate M, Cluzeau C et al: Father-to-daughter transmission of Cornelia de Lange syndrome caused by a mutation in the 5Ⲡuntranslated region of the NIPBL gene. Hum Mutat 2006; 27: 731â735.
Gillis LA, McCallum J, Kaur M et al: NIPBL mutational analysis in 120 individuals with Cornelia de Lange syndrome and evaluation of genotype-phenotype correlations. Am J Hum Genet 2004; 75: 610â623.
Miyake N, Visser R, Kinoshita A et al: Four novel NIPBL mutations in Japanese patients with Cornelia de Lange syndrome. Am J Med Genet 2005; 135: 103â105.
Yan J, Saifi GM, Wierzba TH et al: Mutational and genotype-phenotype correlation analyses in 28 Polish patients with Cornelia de Lange syndrome. Am J Med Genet 2006; 140: 531â1541.
Schouten JP, McElgunn CJ, Waaijer R, Zwijnenburg D, Diepvens F, Pals G : Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification. Nucleic Acids Res 2002; 30: e57.
Allanson JE, Hennekam RCM, Ireland M : De Lange syndrome: subjective and objective comparison of the classical and mild phenotypes. J Med Genet 1997; 34: 645â650.
Nousiainen M, Sillje HH, Sauer G, Nigg EA, Korner R : Phosphoproteome analysis of the human mitotic spindle. Proc Natl Acad Sci USA 2006; 103: 5391â5396.
Myerowitz R, Hogikyan ND : A deletion involving Alu sequences in the beta-hexosaminidase alpha-chain gene of French Canadians with Tay-Sachs disease. J Biol Chem 1987; 262: 15396â15399.
Matejas V, Huehne K, Thiel C, Sommer C, Jakubiczka S, Rautenstrauss B : Identification of Alu elements mediating a partial PMP22 deletion. Neurogenetics 2006; 7: 119â126.
Acknowledgements
We thank all patients and their parents, and all referring physicians for their cooperation in this study.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Bhuiyan, Z., Stewart, H., Redeker, E. et al. Large genomic rearrangements in NIPBL are infrequent in Cornelia de Lange Syndrome. Eur J Hum Genet 15, 505â508 (2007). https://doi.org/10.1038/sj.ejhg.5201776
Received:
Revised:
Accepted:
Published:
Issue date:
DOI: https://doi.org/10.1038/sj.ejhg.5201776
Keywords
This article is cited by
-
Molecular characterization of two novel intronic variants of NIPBL gene detected in unrelated Cornelia de Lange syndrome patients
BMC Medical Genetics (2019)
-
Genomic imbalances in patients with a clinical presentation in the spectrum of Cornelia de Lange syndrome
BMC Medical Genetics (2013)
-
Spectrum of NIPBL gene mutations in Polish patients with Cornelia de Lange syndrome
Journal of Applied Genetics (2013)
-
Intragenic and large NIPBL rearrangements revealed by MLPA in Cornelia de Lange patients
European Journal of Human Genetics (2012)