Table 3 Simulated and estimated QTL positions and effects from a single dataset of a large genome
From: A penalized maximum likelihood method for estimating epistatic effects of QTL
Marker | True parameters | Bayesian analysis | Penalized likelihood | ||||
|---|---|---|---|---|---|---|---|
Position | Effect | Proportion | Position | Effect | Position | Effect | |
1 | 0 | 4.47 | 0.200 | 0 | 4.4593 (0.1507) | 0 | 4.5760 (0.1477) |
21 | 300 | 3.16 | 0.100 | 300 | 3.1493 (0.1462) | 300 | 3.2344 (0.1475) |
31 | 450 | 2.24 | 0.050 | 450 | 2.2770 (0.1510) | 450 | 2.3337 (0.1471) |
51 | 750 | 1.58 | 0.025 | 750 | 1.3133 (0.1644) | 750 | 1.4163 (0.1459) |
71 | 1050 | 1.58 | 0.025 | 1050 | 1.5325 (0.1470) | 1050 | 1.5996 (0.1463) |
91 | 1350 | 1.10 | 0.012 | 1350 | 0.9083 (0.1556) | 1350 | 0.9644 (0.1438) |
101 | 1500 | 1.10 | 0.012 | 1500 | 1.2145 (0.1557) | 1500 | 1.2391 (0.1454) |
111 | 1650 | 0.77 | 0.006 | 1650 | 0.5948 (0.2990) | 1635 | 0.5456 (0.1363) |
121 | 1800 | 0.77 | 0.006 | 1800 | 0.4200 (0.3479) | 1800 | 0.5801 (0.1375) |
