Table 4 Simulated and estimated positions and effects of interacting QTL from a single data set of a large genome
From: A penalized maximum likelihood method for estimating epistatic effects of QTL
Marker pair | True parameter | Bayesian analysis | Penalized likelihood | ||||
|---|---|---|---|---|---|---|---|
Positions 1 & 2 | Effect | Proportion | Positions 1 & 2 | Effect | Positions 1 & 2 | Effect | |
1–11 | 0 & 150 | 1.00 | 0.010 | 0 & 150 | 0.7374 (0.1618) | 0 & 150 | 0.8894 (0.1432) |
2–119 | 15 & 1770 | 3.87 | 0.150 | 15 & 1770 | 3.8497 (0.1648) | 15 & 1770 | 3.7274 (0.1476) |
10–91 | 135 & 1350 | 1.30 | 0.017 | 135 & 1350 | 1.2942 (0.1759) | 135 & 1350 | 1.3931 (0.1459) |
15–75 | 210 & 1110 | 1.73 | 0.030 | 210 & 1110 | 1.5068 (0.2593) | 210 & 1110 | 1.6738 (0.1465) |
20–46 | 285 & 675 | 1.00 | 0.010 | 285 & 675 | 0.9463 (0.1739) | 285 & 660 | 0.7630 (0.1416) |
21–22 | 300 & 315 | 1.00 | 0.010 | 300 & 315 | 0.9371 (0.2765) | Missing | |
26–91 | 375 & 1350 | 1.00 | 0.010 | 375 & 1350 | 1.2616 (0.1712) | 360 & 1350 | 0.8232 (0.1424) |
41–61 | 600 & 900 | 0.71 | 0.005 | 600 & 915 | 0.2545 (0.3102) | Missing | |
56–91 | 825 & 1350 | 3.16 | 0.100 | 825 & 1350 | 3.1118 (0.1603) | 825 & 1350 | 3.0166 (0.1474) |
65–85 | 960 & 1260 | 2.24 | 0.050 | 960 & 1260 | 2.4575 (0.1543) | 900 & 1275 | 0.7848 (0.1492) |
960 & 1245 | 1.8898 (0.1468) | ||||||
86–96 | 1275 & 1425 | 0.89 | 0.008 | 1275 & 1425 | 0.9811 (0.2198) | 1275 & 1425 | 1.0248 (0.1443) |
101–105 | 1500 & 1560 | 1.00 | 0.010 | 1500 & 1560 | 0.9895 (0.1645) | Missing | |
111–121 | 1650 & 1800 | 2.24 | 0.050 | 1650 & 1800 | 1.8096 (0.9778) | 1650 & 1800 | 2.3618 (0.1472) |
