Table 1 Probability of categories given genotypes at L1 and L2 in Case I

L1	L2			Probability of categories of the given genotypes at L1
	Q2Q2	Q2q2	q2q2
Q1Q1	s₀₁₁^a=0.235	s₀₁₂=0.186	s₀₁₃=0.235	p_01.^b=0.210
	s₁₁₁=0.421	s₁₁₂=0.655	s₁₁₃=0.421	p_11.=0.538
	s₂₁₁=0.345	s₂₁₂=0.159	s₂₁₃=0.345	p_21.=0.252
Q1q1	s₀₂₁=0.226	s₀₂₂=0.226	s₀₂₃=0.226	p_02.=0.226
	s₁₂₁=0.274	s₁₂₂=0.500	s₁₂₃=0.274	p_12.=0.387
	s₂₂₁=0.500	s₂₂₂=0.274	s₂₂₃=0.500	p_22.=0.387
q1q1	s₀₃₁=0.186	s₀₃₂=0.235	s₀₃₃=0.186	p_03.=0.210
	s₁₃₁=0.159	s₁₃₂=0.345	s₁₃₃=0.159	p_13.=0.252
	s₂₃₁=0.655	s₂₃₂=0.421	s₂₃₃=0.655	p_23.=0.538
Probability of categories	p_0.1^c=0.218	p_0.2=0.218	p_0.3=0.218
given genotypes at L2	p_1.1=0.282	p_1.2=0.500	p_1.3=0.282
	p_2.1=0.500	p_2.2=0.282	p_2.3=0.500

^as_ijk stands for the probability of an individual with genotype j and k at two loci being classified into the category C_i (i=0, 1, 2; j=1, 2, 3; k=1, 2, 3).
^bp_ij. stands for the probability of category C_i for the genotype j at L1, which is obtained as p_ij.=s_ij1/4+s_ij2/2+s_ij3/4.
^cp_i.k. stands for the probability of category C_i for the genotype k at L2, which is obtained as p_i.k=s_i1k/4+s_i2k/2+s_i3k/4.

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