Table 1 Genes regulated by the p53–DREAM pathway

From: Cell cycle arrest through indirect transcriptional repression by p53: I have a DREAM

Genes regulated by the p53–DREAM pathway

Protein name

Protein

Function, enzymatic activity

GO – Gene Ontology

Gene

Adrenocortical dyspl. pr. hom., shelterin compl. sub. telom. recruit.

ACD

Complex form., DNA binding

Telomere maintenance

ACD

Anillin, actin-binding protein anillin

anillin

Actin binding

Mitosis

ANLN

Rho GTPase-activating protein 11A

ARHGAP11A

GTPase activator activity

Small GTPase-mediated signal transduction

ARHGAP11A

Rho GTPase-activating protein 11B

ARHGAP11B

Rho GTPase activation

Small GTPase-mediated signal transduction

ARHGAP11B

Rho guanine nucleotide exchange factor 39, C9orf100

ARHGEF39

Rho guanyl-nucleotide exch.

Cell migration, Rho protein signal transduction

ARHGEF39

ADP-ribosylation factor-like protein 13B

ARL13B

GTP binding

Cilium assmb., small GTPase signal transduction

ARL13B

ADP-ribosylation factor-like protein 6-interacting protein 1

ARL6IP1

Chromosomal pass. complex

Cotranslational protein targeting to membrane

ARL6IP1

Anti-silencing function 1B histone chaperone

ASF1B

Histone chaperone

Chromatin assembly, DNA replication

ASF1B

Abnormal spindle-like microcephaly-associated protein

ASPM

Complex formation

Spindle assembly, mitosis, neurogenesis

ASPM, MCPH5

ATPase family AAA domain-containing protein 2

ATAD2

ATPase

Transcriptional coactivator

ATAD2

Aurora kinase A

AURKA

Serine/threonine kinase

Spindle/microtubule formation, mitosis

AURKA

Aurora kinase B

AURKB

Serine/threonine kinase

Cytokinesis, histone modification, mitosis

AURKB

BLM, Bloom syndrome RecQ like helicase

BLM

DNA helicase

DNA replication and repair

BLM

MYB proto-oncogene like 2

B-MYB, MYBL2

Transcription factor

S phase, activator

MYBL2

Borealin, CDCA8

Borealin, CDCA8

Complex formation

Chromosomal passenger complex, spindle form.

CDCA8, Borealin

BRCA1, Breast cancer type 1 susceptibility protein

BRCA1

Ubiquitin ligase

DNA repair, transcription, ubiquitination

BRCA1, FANCS

BRCA2, Breast cancer type 2 susceptibility protein

BRCA2

Complex formation

DNA repair, transcription

BRCA2, FANCD1

BRIP1, BRCA1 interacting protein C-terminal helicase 1

BRIP1, BACH1

DNA helicase and ATPase

DNA replication and repair

BRIP1, FANCJ

BUB1, mitotic checkpoint serine/threonine kinase

BUB1

Serine/threonine kinase

Spindle formation, mitosis

BUB1

BUB3, mitotic checkpoint protein

BUB3

Protein binding, WD repeats

Spindle formation, mitosis

BUB3

BUB1, mitotic checkpoint serine/threonine kinase B

BUBR1, BUB1B

Serine/threonine kinase

Spindle formation, mitosis

BUB1B, BUBR1

Calcyclin-binding protein

CACYBP

Complex formation

Ubiquitin-mediated degradation of beta-catenin

CACYBP

Cancer susceptibility candidate 5, Kinetochore-null protein 1

CASC5, KNL1

Protein binding

Kinetochore, spindle formation, mitosis

KNL1, CASC5

Chromobox protein homolog 3, Heterochromatin prot. 1 hom. gam.

CBX3, HECH

Histone binding

Transcription, histone methyltransferase binding

CBX3

Coiled-coil domain-containing protein 150

CCDC150

  

CCDC150

Coiled-coil domain-containing protein 18, Sarco antig NY-SAR-24

CCDC18

  

CCDC18

Coiled-coil domain-containing protein 34, Ren carc ant NY-REN-41

CCDC34

  

CCDC34

CDC20, Cell division cycle protein 20

CDC20, p55CDC

Complex formation

mitotic spindle assembly checkpoint, mitosis

CDC20, p55CDC

CDC20, cell division cycle 25A, M-phase inducer phosphatase 1

CDC25A

Tyrosine phosphatase

G1/S and G2/M transition

CDC25A

CDC25B, Cell division cycle 25B, M-phase inducer phosphatase 2

CDC25B

Tyrosine phosphatase

G2/M phases and abscission during cytokinesis

CDC25B

CDC25C, cell division cycle 25C, M-phase inducer phosphatase 3

CDC25C

Tyrosine phosphatase

G2/M phases and abscission during cytokinesis

CDC25C

CDC6, cell division cycle 6

CDC6

 

G1/S transition, DNA replication

CDC6

CDC7, cell division cycle 7

CDC7

Protein kinase

G1/S transition

CDC7

CDCA2, cell division cycle-associated protein 2, Repo-Man

CDCA2

Complex formation

Chromosome segregation

CDCA2

Cell division cycle-assoc. prot. 3, trigger of mitotic entry protein 1

CDCA3, TOME-1

F-box-like protein

Protein ubiquitination

CDCA3, TOME-1

CDK1, cyclin-dependent kinase 1, cdc2

CDK1, CDC2

Serine/threonine kinase

G1/S and G2/M transition

CDK1, CDC2

CDK2, cyclin-dependent kinase 2

CDK2

Serine/threonine kinase

G1/S and G2/M transition

CDK2

CDKN2D, cyclin-dependent kinase 4 inhibitor D, p19-INK4d

CDKN2D, p19

CDK4/6 inhibitor

G1/S transition

CDKN2D

CDKN3, cyclin-dependent kinase inhibitor 3, CDI1, CIP2, KAP

CDKN3, CIP2

CDK2 phosphatase

Regulation of cyclin-dependent kinase activity

CDKN3

Chromatin licensing and DNA replication factor 1

CDT1

Chromatin binding

DNA replication, mitosis

CDT1

CENP-A, Histone H3-like centromeric protein A

CENP-A

Chromatin binding

Nucleosome and kinetochore assembly

CENPA

CENP-C, centromere protein C

CENP-C

Kinetochore binding

Microtubule function, cytokinesis, mitosis

CENPC

CENP-E, centromere protein E

CENP-E

Kinetochore binding

Microtubule function, cytokinesis, mitosis

CENPE

CENP-F, centromere protein F, Mitosin

CENP-F, Mitosin

Kinetochore binding

Microtubule function, cytokinesis, mitosis

CENPF, CENF

CENP-L, centromere protein L

CENP-L, ICEN33

Chromatin binding

Nucleosome and kinetochore assembly

CENPL, ICEN33

CENP-N, centromere protein N

CENP-N, ICEN32

Chromatin binding

Nucleosome and kinetochore assembly

CENPN, ICEN32

CENP-O, centromere protein O

CENP-O

Complex formation

Nucleosome assembly, centromere, mitosis

CENPO

CENP-W, centromere protein W

CENP-W

Complex formation

Nucleosome assembly, centromere, mitosis

CENPW

CEP55, centrosomal protein of 55 kDa

CEP55

Complex formation

Mitotic exit, cell separation after cytokinesis

CEP55

CEP152, centrosomal protein of 152 kDa

CEP152

Protein kinase binding

Centriole and centrosome duplication

CEP152

CEP295, centrosomal protein 295, DD8

CEP295, DD8

Complex formation

centrosome, microtubules, cytoskeleton, cilium

CEP295, KIAA1731

CHAF1A, chromatin assembly factor 1 subunit A

CHAF1A

Histone binding

Histone octamer assembly, chromatin, replicat.

CHAF1A

CHEK1, checkpoint kinase 1

CHEK1

Serine/threonine kinase

DNA damage response, G2/M transition

CHEK1

CHEK2, checkpoint kinase 2

CHEK2

Serine/threonine kinase

DNA damage response, G2/M transition

CHEK2

CIP2A, cancerous inhibitor of protein phosphatase 2A

CIP2A

Phosphatase inhibitor

Oncoprotein, cell adhesion, transcription

KIAA1524, CIP2A

CIT, Citron Rho-interacting kinase

CIT, CRIK

Serine/threonine kinase

Cytokinesis, GTPase signal transduction

CIT, CRIK

Cytoskeleton-associated protein 2, tumor- and microtub.-assoc.

CKAP2, TMAP

Microtubule stabilizing

Apoptotic process, microtubule polymerization

CKAP2

CKAP2L, cytoskeleton-associated protein 2-like, Radmis

CKAP2L, Radmis

Complex formation

Microtubule bundles, centrioles during mitosis

CKAP2L

CKAP5, cytoskeleton-associated protein 5

CKAP5

Microtubule binding

Microtubule cytoskeleton polarity, spindle pole

CKAP5

Cyclin-dependent kinases regulatory subunit 1, CDC28 kin sub 1B

CKS-1, CKS-1B

Cyclin-dep. kinase binding

G1/S transition, CDK binding

CKS1B, CKS1

CKS-2, cyclin-dependent kinases regulatory subunit 2

CKS-2

Cyclin-dep. kinase binding

Meiosis I, CDK binding

CKS2

CMS1, ribosomal small subunit homolog

CMSS1, CMS1

Poly(A) RNA binding

Poly(A) RNA binding

CMSS1

CTD small phosphatase-like protein 2

CTDSPL2

Protein phosphatase

BMP signaling pathway, transport from nucleus

CTDSPL2

Cyclin A

Cyclin A, cyclin A2

Complex formation

Serine/threonine kinase activation, mitosis

CCNA, Ccna2

Cyclin B1

cyclin B1

Complex formation

Serine/threonine kinase activation, mitosis

CCNB1

Cyclin B2

Cyclin B2

Complex formation

Serine/threonine kinase activation, mitosis

CCNB2

DAP-5, Disks large-associated protein 5

DAP-5, DLGAP5

 

Metaphase/anaphase transition, ubiqutination

DLGAP5, DLG7

DARS2, Aspartate-tRNA ligase, mitochondrial

DARS2

Aspartate-tRNA ligase

Gene expression, aminoacylation for translation

DARS2

Protein DBF4 homolog B, activator of S phase kinase-like prot. 1

DBF4B, ASKL1

CDC7 kinase activation

DNA replication, G2/M transition

DBF4B, DRF1

DCAF16, DDB1- and CUL4-associated factor 16

DCAF16

Protein ubiquitination

Protein ubiquitination

DCAF16

DCK, deoxycytidine kinase

DCK

Nucleoside kinase

Nucleotide biosynthetic process

DCK

DCLRE1B, 5' exonuclease Apollo

DCLRE1B, APOLLO

5'–3' DNA exonuclease

Telomere maintenance, double-strand br. rep.

DCLRE1B

DCP2, m7GpppN-mRNA hydrolase

DCP2

mRNA-decapping enzyme

Regulation of mRNA stability, gene expression

DCP2

DNA damage-induced apoptosis suppressor, NO-inducible prot.

DDIAS, NOXIN

 

Apoptosis, DNA damage resp., cell cycle arrest

DDIAS, NOXIN

DDX10, ATP-dependent RNA helicase DDX10

DDX10

RNA helicase

RNA secondary structure unwinding

DDX10

DEK, proto-oncogene

DEK

Histone binding

Chromatin modification, mRNA processing

DEK

DEPDC1, DEP domain-containing protein 1A

DEPDC1

Transcriptional corepressor

GTPase activator activity, transcription

DEPDC1

DEPDC1B, DEP domain-containing protein 1B

DEPDC1B

GTPase activator activity

Cell migration, Wnt signaling pathway, GTPase

DEPDC1B, XTP1

Dihydrofolate reductase

DHFR

Oxidoreductase

DNA synthesis

DHFR

DLEU1, Leukemia-associated protein 1

DLEU1

  

DLEU1, XTP6

DNMt3B, DNA methyltransferase 3 beta

DNMT3B

Methyltransferase

Chromatin binding, transcriptional corepressor

DNMT3B

E2F1, E2F transcription factor 1

E2F1

Transcription factor

Cell cycle

E2F1

ECT2, epithelial cell transforming 2

ECT2

GTPase

Cytokinesis, spindle formation, mitosis

ECT2

establishment of sister chromatid cohesion N-acetyltransferase 2

ESCO2

Lysine N-acetyltransferase

Chromosome segregation

ESCO2

EXO1, Exonuclease 1

EXO1

DNA nuclease

DNA repair, recombination, replication

EXO1

EXOSC8, exosome component 8

EXOSC8

Exoribonuclease

RNA degradation

EXOSC8

EXOSC9, exosome component 9

EXOSC9

Complex formation

RNA degradation

EXOSC9

Exportin-2, CSE1 chromosome segregation 1-like

Exportin-2

Export receptor importin-a

Protein transport from/to nucleus

CSE1L

Histone-lysine N-methyltransferase, enhancer of zeste 2 polycomb

EZH2

Lysine N-methyltransferase

Histone modification, chromatin organization

EZH2

FAM64A, family with sequence similarity 64 member A

FAM64A

Complex formation

Mitosis

FAM64A

FAM83D, family with sequence similarity 83 member D

FAM83D

Complex formation

Mitosis

FAM83D

FANCA, Fanconi anemia complementation group A

FANCA

Complex formation

Fanconi anemia, DNA repair

FANCA

FANCB, Fanconi anemia complementation group B

FANCB

Complex formation

Fanconi anemia, DNA repair

FANCB

FANCC, Fanconi anemia complementation group C

FANCC

Complex formation

Fanconi anemia, DNA repair

FANCC

FANCD2, Fanconi anemia complementation group D2

FANCD2

Complex formation

Fanconi anemia, DNA repair

FANCD2

FANCE, Fanconi anemia complementation group E

FANCE

Complex formation

Fanconi anemia, DNA repair

FANCE

FANCG, Fanconi anemia complementation group G

FANCG

Complex formation

Fanconi anemia, DNA repair

FANCG

FANCI, Fanconi anemia complementation group I

FANCI

DNA binding, complex form.

Fanconi anemia, DNA repair

FANCI

FANCL, Fanconi anemia complementation group L

FANCL

Ubiquitin ligase

Fanconi anemia, DNA repair

FANCL

FANCM, Fanconi anemia complementation group M

FANCM

ATPase, DNA binding

Fanconi anemia, ubiquitination, DNA repair

FANCM

FBXO5, F-box protein 5, Early mitotic inhibitor 1, EMI1, FBX5

FBXO5

Complex formation

Mitosis

FBXO5

FEN1, flap structure-specific endonuclease 1

FEN1

DNA nuclease

DNA repair

FEN1, RAD2

FOXM1, forkhead box M1

FOXM1

Transcription factor

G2 phase, mitosis, activator

FOXM1

FZR1, fizzy/cell division cycle 20 related 1

FZR1

Activator of ubiquitination

Mitosis, anaphase promoting complex/cyclos.

FZR1

G2E3, G2/M-phase specific E3 ubiquitin protein ligaseprovided

G2E3

Ubiquitin ligase

G2 phase, mitosis

G2E3

GASL2L3, growth arrest specific 2 like 3

GAS2L3

Complex formation

Cytokinesis

GAS2L3

GPSM2, G-protein signaling modulator 2provided

GPSM2

GDP-dissociation inhibitor

G-protein coupled receptor sign., mitotic spindle

GPSM2

GTSE1, G2 and S-phase expressed 1

GTSE1

Complex formation

Microtubule organization

GTSE1

histone, H2A histone family member X

H2AFX, H2AX

Histone

Nucleosome formation, DNA repair

H2AFX

histone, H2A histone family member Z

H2AFZ, H2AZ

Histone

Nucleosome formation, embryonic development

H2AFZ

haspin, germ cell associated 2

haspin, GSG2

Serine/threonine kinase

Mitosis, microtubule organization

GSG2

HAUS augmin like complex subunit 6

HAUS6

Complex formation

Cytokinesis, spindle assembly

HAUS6

HAUS augmin like complex subunit 8

HAUS8, HICE1

Complex formation

Cytokinesis, spindle assembly

HAUS8

histone cluster 1 H2A family member e

HIST1H2AE, H2A.1

Histone

Nucleosome formation

HIST1H2AE

histone cluster 1 H2A family member m

HIST1H2AM

Histone

Nucleosome formation

HIST1H2AM

histone cluster 1 H2B family member f

HIST1H2BF

Histone

Nucleosome formation

HIST1H2BF

histone cluster 1 H2B family member h

HIST1H2BH

Histone

Nucleosome formation

HIST1H2BH

histone cluster 1 H2B family member i

HIST1H2BI

Histone

Nucleosome formation

HIST1H2BI

histone cluster 1 H2B family member m

HIST1H2BM

Histone

Nucleosome formation

HIST1H2BM

histone cluster 1 H3 family member c

HIST1H3C

Histone

Nucleosome formation

HIST1H3C

histone cluster 1 H3 family member d

HIST1H3D

Histone

Nucleosome formation

HIST1H3D

histone cluster 1 H4 family member c

HIST1H4C

Histone

Nucleosome formation

HIST1H4C

histone cluster 2 H2A family member b

HIST2H2AB

Histone

Nucleosome formation

HIST2H2AB

histone cluster 2 H2A family member c

HIST2H2AC

Histone

Nucleosome formation

HIST2H2AC

Holliday junction recognition protein

HJURP

DNA binding, chaperone

Centromere, nucleosome assembly

HJURP

HMGB2, High mobility group protein B2

HMGB2, HMG2

DNA binding

Chromatin, transcription, recombination

HMGB2

HMMR, Receptor for hyaluronan-med. motility, RHAMM, CD168

HMMR, RHAMM

Complex formation

Cell adhesion, mitosis, hyaluronic acid binding

HMMR, RHAMM

HNRNPA0, heterogeneous nuclear ribonucleoprotein A0

HNRNPA0

RNA binding

mRNA processing

HNRNPA0

HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1

hnRNP A2/B1

RNA binding

RNA and single-stranded telomeric DNA binding

HNRNPA2B1

BORA, Aurora kinase A activator, protein aurora borealis

HsBora

Kinase binding

Spindle/microtubule formation, mitosis

BORA

IFT80, intraflagellar transport 80

IFT80

Complex formation

Cilia assembly

IFT80

INCENP, inner centromere protein

INCENP

Complex formation

Cytokinesis, centromere, microtubule binding

INCENP

ING1, inhibitor of growth family member 1

ING1

Complex formation

p53 interaction, tumor suppr., chromatin

ING1

Ki-67

Ki-67

Complex formation

Mitotic chromosome stabilization

MKI67

KIF11, kinesin family member 11

KIF11, EG5

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF11, EG5

KIF14, kinesin family member 14

KIF14

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF14

KIF15, kinesin family member 15

KIF15

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF15

KIF18A, kinesin family member 18A

KIF18A

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF18A

KIF20B, kinesin family member 20B, M-phase phosphoprotein-1

KIF20B, MPP1

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF20B, MPP1

KIF22, kinesin family member 22

KIF22, KID

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF22, KID

KIF23, kinesin family member 23, Mitotic kinesin-like protein 1

KIF23, MKLP1

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF23, MKLP1

KIF24, kinesin family member 24

KIF24

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF24

KIF2C, kinesin family member 2C, Mitotic centromere-ass. kinesin

KIF2C, MCAK

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF2C

KIF4A, kinesin family member 4A

KIF4A, KIF4

Microtubule binding

Microtubule function, cytokinesis, mitosis

KIF4A

KIFC1, kinesin family member C1

KIFC1

ATPase

Microtubule motor activity, spindle assembly

KIFC1

KPNA2, Importin subunit alpha-1, karyopherin subunit alpha 2

KPNA2

Protein transporter

Nuclear protein import, recombination

KPNA2

KPNB1, Importin subunit beta-1, karyopherin subunit beta 2

KPNB1

Protein transporter

Nuclear protein import

KPNB1

lamin B1

lamin B1

Lamin

Nuclear lamina

LMNB1

Acidic leucine-rich nuclear phosphoprotein 32 family member E

LANP-like protein

Histone chaperone

Histone exchange, chromatin modification

ANP32E

LIN-54 DREAM MuvB core complex component

LIN54

DNA binding

Transcription, activator, repessor, cell cycle

LIN54

LIN-9 DREAM MuvB core complex component

LIN9

complex, transcription

transcription, activator, repessor, cell cycle

LIN9

LSM5, U6 snRNA-associated Sm-like protein LSm5

LSM5

RNA binding

mRNA processing

LSM5

MAD2, Mitotic spindle assembly checkpoint protein MAD2A

MAD2

Complex formation

Mitotic spindle assembly checkpoint, mitosis

MAD2L1, MAD2

MAD3, Max dimerization protein 3

MAD3, MXD3

Transcription factor

MYC/MAX-related, repressor

MXD3

GREATWALL, microtubule associated serine/threonine kinase like

MASTL

Serine/threonine kinase

G2 phase, mitosis

MASTL

MCM2, minichromosome maintenance complex component 2

MCM2

Complex formation, ATPase

DNA helicase, replication

MCM2

MCM3, minichromosome maintenance complex component 3, HCC5

MCM3, HCC5

Complex formation, ATPase

DNA helicase, replication

MCM3

MCM4, minichromosome maintenance complex component 4

MCM4

Complex formation, ATPase

DNA helicase, replication

MCM4

MCM5, minichromosome maintenance complex comp. 5, CDC46

MCM5, CDC46

Complex formation, ATPase

DNA helicase, replication

MCM5

MCM6, minichromosome maintenance complex component 6, Mis5

MCM6, Mis5

Complex formation, ATPase

DNA helicase, replication

MCM6

MCM7, minichromosome maintenance complex comp. 7, CDC47

MCM7, CDC47

Complex formation, ATPase

DNA helicase, replication

MCM7

MCM8, minichromosome mainten. 8 homolog. recomb. repair factor

MCM8

Complex formation, ATPase

Helicase, replication, homolog. recomb. repair

MCM8

MDC1, mediator of DNA damage checkpoint 1

MDC1

Complex formation

DNA repair, checkpoint control, S, G2, M phase

MDC1

MELK1, maternal embryonic leucine zipper kinase

MELK

Serine/threonine kinase

Apoptosis, G2/M transition

MELK

METTL4, methyltransferase like 4

METTL4

DNA Methyltransferase

DNA methylation, adenine-specific

METTL4

MIS18, kinetochore protein A

MIS18A

Complex formation

Centromere complexes, chromosome segregat.

MIS18A

MIS18BP1, MIS18 binding protein 1

MIS18BP1

Complex formation

Centromere complexes, chromosome segregat.

MIS18BP1

MND1, meiotic nuclear divisions 1

MND1

DNA binding

Meiosis, DNA recombination

MND1

MSH2, mutS homolog 2, Heredit. non-polyp. color. Canc. 1, HNPCC

MSH2

Complex formation, ATPase

DNA repair, mismatch repair

MSH2, HNPCC

MSH6, mutS homolog 6

MSH6

Complex formation, ATPase

DNA repair, mismatch repair

MSH6

metal response element bind. transcription fact. 2, polycomblike 2

MTF2, PCL2

DNA binding

Histone binding, transcription, repression

MTF2

MZT1, Mitotic-spindle organizing protein 1

MZT1, MOZART1

Complex formation

Tubulin binding, centrosome, spindle assembly

MZT1

NASP, nuclear autoantigenic sperm protein

NASP

Histone binding

DNA replication

NASP

NCAPD2, condensin, non-SMC condensin I complex subunit D2

NCAPD2

Complex formation

Chromosome condensation, mitosis

NCAPD2

NCAPD3, condensin, non-SMC condensin II complex subunit D3

NCAPD3

Complex formation

Chromosome condensation, mitosis

NCAPD3

NCAPG, condensin, non-SMC condensin I complex subunit G

NCAPG

Complex formation

Chromosome condensation, mitosis

NCAPG

NCAPG2, condensin, non-SMC condensin II complex subunit G2

NCAPG2

Complex formation

Chromosome condensation, mitosis

NCAPG2

NCAPH, condensin, non-SMC condensin I complex subunit H

NCAPH

Complex formation

Chromosome condensation, mitosis

NCAPH

NDC1, transmembrane nucleoporin

NDC1, TMEM48

Complex formation

Nuclear envelope assembly, nuclear transport

NDC1, TMEM48

NDC80, kinetochore complex component NDC80

NDC80

Complex formation

Chromosome segregation, microtubule binding

NDC80

NEIL3, nei like DNA glycosylase 3

NEIL3

DNA endonuclease

DNA repair

NEIL3

NEK2, NIMA related kinase 2

NEK2

Serine/threonine kinase

Chromosome condensation, spindle assembly

NEK2

NET1, neuroepithelial cell transforming 1

NET1

Rho guanyl-nucleotide exch.

Apoptosis, signal transduction

NET1

NOP58, ribonucleoprotein

NOP58

Complex formation

Ribosome biogenesis

NOP58

NOXIN, DNA damage-induced apoptosis suppressor

NOXIN, DDIAS

 

Apoptosis, response to DNA damage, mitosis

C11orf82, DDIAS

nuclear casein kinase and cyclin-dependent kinase substrate 1

NUCKS1, JC7

DNA binding

DNA damage response, homologous recomb.

NUCKS1

NUF2, NDC80 kinetochore complex component

NUF2, CDCA1

Complex formation

Chromosome segregation, microtubule binding

NUF2

NUP107, nucleoporin 107

NUP107

Complex formation

Nucleocytoplasmic transport

NUP107

NUP205, nucleoporin 205

NUP205

Complex formation

Nucleocytoplasmic transport

NUP205

NUP35, nucleoporin 35

NUP35, NUP53

Complex formation

Nucleocytoplasmic transport

NUP35

NUP85, nucleoporin 85, Pericentrin-1

NUP85

Complex formation

Nucleocytoplasmic transport

NUP85

NUSAP1, nucleolar and spindle associated protein 1

NUSAP1, SAPL

Complex formation

Mitotic spindle microtubules

NUSAP1

OCT1, POU class 2 homeobox 1, Octamer-binding protein 1

OCT1, POU2F1

Transcription factor

Proliferation, immune modulation

POU2F1

OIP5, Opa interacting protein 5

OIP5

Complex formation

Centromere binding, chromosome segregation

OIP5

ORC1, origin recognition complex subunit 1

ORC1

DNA binding

DNA replication

ORC1

PALB2, partner and localizer of BRCA2

PALB2, FANCN

Complex form., DNA bindg.

Fanconi anemia, DNA repair, replication

PALB2, FANCN

CENP-M, Centromere protein M

PANE1, CENP-M

Complex formation

Kinetochore formation, mitosis

CENPM

PARPBP, PARP1 binding protein

PARPBP

Complex formation

DNA repair, genomic stability

PARPBP

pericentrin

Pericentrin

Complex formation

Centrosome, microtubules, cilia assembly

PCNT

PHF19, PHD finger protein 19

PHF19

Complex formation

Histone binding, transcription, repression

PHF19

PICH, Plk1-interacting checkpoint helicase

PICH, ERCC6L

DNA helicase

DNA repair, spindle assembly, anaphase

ERCC6L

PIF1, 5'-to-3' DNA helicase

PIF1

ATPase, DNA helicase

DNA repair, telomere maintenance

PIF1

PLK1, Polo-like kinase 1

PLK1

Serine/threonine kinase

G2/M transition, mitosis

PLK1

PLK4, Polo-like kinase 4

PLK4

Serine/threonine kinase

G2/M transition, mitosis

PLK4, SAK

POC5, centriolar protein

POC5

 

Centriole elongation

POC5

POLA1, DNA polymerase alpha-1, catalytic subunit

POLA1

DNA polymerase

DNA replication

POLA1

POLD1, DNA polymerase delta 1, catalytic subunit

POLD1

DNA polymerase, exonucl.

DNA replication, DNA repair

POLD1

POLD3, DNA polymerase delta 3, accessory subunit

POLD3

DNA polymerase, exonucl.

DNA replication, DNA repair, mismatch repair

POLD3

POLE, DNA polymerase epsilon, catalytic subunit

POLE

DNA polymerase

DNA replication, DNA repair

POLE

POLQ, DNA polymerase theta

POLQ

DNA polymerase

DNA replication, DNA repair

POLQ

POP7 homolog, ribonuclease P/MRP subunit

POP7

Ribonuclease

tRNA processing

POP7

PPIH, peptidylprolyl isomerase H

PPIH

Peptidylprolyl isomerase

Protein folding, mRNA splicing

PPIH

PRC1, protein regulator of cytokinesis 1

PRC1

Complex formation

Cytokinesis, spindle formation, mitosis

PRC1

PRIM1, primase (DNA) subunit 1

PRIM1

DNA primase, RNA synthesis

DNA replication

PRIM1

PRIM2, primase (DNA) subunit 2

PRIM2

DNA primase

DNA replication, telomere maintenance

PRIM2

PRR11, proline rich 11

PRR11

 

Cell cycle regulation

PRR11

Partner of SLD Five 1, DNA replication complex GINS protein PSF1

PSF1, GINS1

DNA helicase

DNA helicase, replication

GINS1

Partner of SLD Five 2, DNA replication complex GINS protein PSF2

PSF2, GINS2

Complex formation

DNA helicase, replication

GINS2

PSRC1, proline and serine rich coiled-coil 1

PSRC1, DDA3

Complex formation

Microtubule polymerization, mitosis

PSRC1

Securin, PTTG1, pituitary tumor-transforming 1

PTTG1, securin

Complex formation

Mitotic spindle assembly checkpoint, mitosis

PTTG1

RACGAP1, Rac GTPase-activating protein 1

RACGAP1

Regulation of small GTPase

Cytokinesis, mitosis

RACGAP1

RAD18, E3 ubiquitin protein ligase

RAD18

Ubiquitin ligase

Detection of DNA damage, DNA repair

RAD18

RAD21, cohesin complex component

RAD21

Complex formation

Chromosome cohesion, DNA repair, apoptosis

RAD21

RAD51, recombinase

RAD51, FANCR

DNA-dependent ATPase

Fanconi anemia, DNA repair

RAD51, FANCR

RAD54-like

RAD54L

DNA helicase

DNA repair, mitotic recombination

RAD54L

RANGAP1, Ran GTPase-activating protein 1

RANGAP1

Ran GTPase activator activity

Nuclear pore complex, kinetochore, mitosis

RANGAP1

RECQL4, RecQ like helicase 4

RECQL4

DNA helicase, ATPase

DNA repair, replication, recombination

RECQL4

REEP4, receptor accessory protein 4

REEP4

Complex formation

Microtubule bdg, nuclear envelope reassembly

REEP4

RHINO, RAD9-HUS1-RAD1 interacting nuclear orphan 1

RHINO

Complex formation

DNA repair, cellular response to DNA damage

RHNO1, C12orf32

RIF1, replication timing regulatory factor 1

RIF1

Complex formation

DNA repair, checkpoint control, telemore bindg.

RIF1

RNASEH2A, ribonuclease H2 subunit A

RNASEH2A

RNA endonuclease

DNA replication

RNASEH2A

RNF26, ring finger protein 26

RNF26

Ubiquitin ligase

Endosomal maturation and trafficking

RNF26

RPA2, replication protein A2

RPA2

Complex form., DNA bindg.

DNA repair, replication

RPA2

RTKN2, rhotekin 2

RTKN2

Rho GTPase effector

Cell cycle regulation, apoptosis

RTKN2

SAS-6 centriolar assembly protein, Spindle assem. abn. protein 6

SAS6, SASS6

Complex formation

Centrosome duplication, procentriole formation

SASS6

SCLT1, sodium channel and clathrin linker 1

SCLT1

Complex formation

Clathrin binding, cilia assembly

SCLT1

Separase, extra spindle pole bodies like 1

Separase, ESPL1

Protease

Chromosome segregation

ESPL1

SETD8, lysine methyltransferase 5A

SETD8, KMT5A

Lysine N-methyltransferase

Protein methylation, transcriptional repression

KMT5A, SETD8

SGO1, shugoshin 1

SGO1, SGOL1

Complex formation

Chromosome segregation, centromere binding

SGOL1, SGO1

SGO2, shugoshin 2

SGO2, SGOL2

Complex formation

Sister chromatid cohesion, meiosis, centromere

SGOL2, SGO2

SHCBP1, SHC binding and spindle associated 1

SHCBP1

 

Cell proliferation

SHCBP1

SKA1, Spindle and kinetochore-associated protein 1

SKA1

Complex formation

Kinetochore, microtubules, mitosis

SKA1

SKAP, kinetochore localized astrin/SPAG5 binding protein

SKAP, KNSTRN

Complex formation

Mitotic spindle, chromosome segregation

KNSTRN

SKP2, S-phase kinase associated protein 2

SKP2

F-box-like protein

Protein ubiquitination

SKP2

SLC25A40, solute carrier family 25 member 40

SLC25A40

 

Mitochondrial carrier

SLC25A40

SMC-2, structural maintenance of chromosomes 2

SMC-2

ATP binding

DNA condensation, mitosis

SMC2

SMC-4, structural maintenance of chromosomes 4

SMC-4

ATP binding

DNA condensation, mitosis

SMC4

structural maintenance of chromos. Flex. hinge domain contain. 1

SMCHD1

Complex formation

DNA methylation

SMCHD1

Sororin, CDCA5

Sororin, CDCA5

Chromatin binding

Mitotic sister chromatid cohesion

CDCA5, Sororin

Sp4, transcription factor

SP4

Transcription factor

Transcription

SP4

SPAG5, sperm associated antigen 5

SPAG5

Complex formation

Mitotic spindle, chromosome segregation

SPAG5

SPC25, NDC80 kinetochore complex component

SPC25

Complex formation

Chromosome segregation, microtubule binding

SPC25

Spindly, Coiled-coil domain-containing protein 99

SPDL1/CCDC99

Kinetochore binding

Establishment of mitotic spindle orientation

SPDL1/CCDC99

STIL, SCL/TAL1 interrupting locus

STIL

 

Embryonic development, cell proliferation

STIL

STK17B, serine/threonine kinase 17b (apoptosis-inducing)

STK17B, DRAK2

Serine/threonine kinase

Apoptosis

STK17B, DRAK2

Survivin, baculoviral IAP repeat containing 5

Survivin, BIRC5

Chromosomal pass. complex

Mitosis, cytokinesis, transcription

BIRC5

SUZ12, polycomb repressive complex 2 subunit

SUZ12

Complex formation

Transcriptional repession, histone methylation

SUZ12

TACC3, transforming acidic coiled-coil containing protein 3

TACC3, ERIC1

Complex formation

Spindle/microtubule formation, mitosis

TACC3

Tastin, Trophinin-assisting protein, TROAP

Tastin, TROAP

Complex formation

Cell adhesion

Tastin, TROAP

TCERG1, transcription elongation regulator 1

TCERG1, CA150

Transcription factor

Inhibition of transcript elongation

TCERG1

TIMELESS, timeless circadian clock

TIMELESS, TIM1

Complex formation

Circadian rhythm, DNA repair, replication

TIMELESS

Thymidine kinase 1

TK1

Kinase

DNA synthesis

TK1

Thymopoietin, Lamina-associated polypeptide 2, isoform alpha

TMPO, LAP2

Complex formation

Nuclear structure, post-mitotic nuclear assembly

TMPO, LAP2

TOP2A, topoisomerase (DNA) II alpha

TOP2A

DNA topoisomerase

Mitosis, meiosis, chromosome segregation

TOP2A

TPX2, microtubule nucleation factor

TPX2

Complex formation

Mitotic spindle assembly, apoptosis, G2/M trans

TPX2

TRAIP, TRAF interacting protein, TRIP

TRAIP, TRIP

Ubiquitin ligase

Signal transduction, apoptosis, spindle, mitosis

TRAIP, TRIP

Treslin, TOPBP1 interacting checkpoint and replication regulator

Treslin, SLD3

Complex formation

DNA replication, DNA repair, checkpoint control

TICRR, Treslin

TTK, Mitotic checkpoint kinase Mps1, TTK protein kinase

TTK, MPS1

Serine/threonine/tyr. kinase

Spindle formation, mitosis

TTK, MPS1

SNRPA, small nuclear ribonucleoprotein polypeptide A

U1A, SNRPA

Complex formation

U1 snRNA binding, splicing

SNRPA, U1A

UACA, Uveal autoantigen with coiled-coil domains and ankyrin repeats

UACA

Complex formation

Apoptosis

UACA

UBE2C, Ubiquitin-conjugating enzyme E2 C, UbcH10

UBE2C, UbcH10

Ubiquitin conjug. enzyme

Mitosis

UBE2C, UbcH10

UBE2S, Ubiquitin-conjugating enzyme E2 S

UBE2S

Ubiquitin conjug. enzyme

Exit from mitosis

UBE2S

UBE2T, Ubiquitin-conjugating enzyme E2 T

UBE2T, FANCT

Ubiquitin conjug. enzyme

Fanconi anemia, DNA repair, ubiquitination

UBE2T, FANCT

UDG, uracil DNA glycosylase

UDG, UNG

Uracil DNA N-glycosylase

DNA repair, base-excision repair

UNG

USP1, ubiquitin specific peptidase 1

USP1, UBP

Endopeptidase

De-ubiquitination, neg. regulation DNA repair

USP1

Wee1-like protein kinase

WEE1

Serine/threonine kinase

G2/M transition, mitosis

WEE1

WD repeat containing antisense to TP53, Telomerase Cajal body pr.

WRAP53, TCAB1

Telomerase component

Telomere maintenance, p53 antisense transcript

WRAP53

YEATS4, YEATS domain-containing 4

YEATS4, GAS41

Complex formation

Transcription, histone acetylation

YEATS4, GAS41

ZNF367, zinc-finger protein 367, CDC14B

ZNF367

DNA binding

Transcription

ZNF367

ZRANB3, zinc-finger, RAN-binding domain-containing 3

ZRANB3, AH2

Helicase and endonuclease

DNA repair, cellular response to DNA damage

ZRANB3, AH2

  1. Genes listed bind DREAM components in their promoters and are downregulated following p53 activation. The list was compiled from meta-analyses reported in several studies.17, 29, 31, 66 Criteria for inclusion as genes regulated by the p53–p21–DREAM–E2F/CHR (p53–DREAM) pathway are binding of p130, E2F4, LIN9, LIN54, and the lack of binding by p53 as assayed by ChIP together with downregulation of target gene mRNA after activation of p53.17, 29, 31, 66 An updated compilation of data sets from several genome-wide studies has been published65, 67 and can be consulted to retrieve data on individual genes at www.targetgenereg.org.