Table 1 SLY ChIP-Seq details
SLY ChIP DNA | Input DNA | |
|---|---|---|
Total number of reads | 37 495 530 | 26 337 788 |
Total number of alignments | 23 699 247 | 25 636 677 |
Final number of tags (no duplicate reads) | 9 754 313 | 208 29 1 54 |
Normalized | 9 754 313 | 754 313 |
MACS 1.4.2 peak calling | ||
Paired peaks | 3631 | |
Predicted fragment length | 147 | |
Final MACS peaks | 13 664 | |
Negative peaks | 99 | |
False discovery rate | 0.72% | |
Annotation | ||
SLY-enriched genomic regions | 13 664 | |
Percentage of intervals within 10Kb of NCBI genes (mm10) | 67.8% | |
Percentage of Intervals within Promoter Region (−7500/+2500 bp of NCBI Gene Start) | 46.8% | |
Percentage of NCBI genes (mm10) with SLY at TSS | 16% | |
Percentage of NCBI genes (mm10) with SLY at ±1kb of TSS | 19% |
