Table 2 Differential expression of known transcriptional targets of ATF4 (except those listed in the Table 1) from the lists of genes upregulated by mitochondrial ETC complex III inhibition in the absence of p53 activation (presented in Tables S1 and S2). HCT116 cells were treated with myxothiazol for 5 h (M5), 13 h (M13), 17 h (M17) and for 13 h in the presence of uridine (MU13)

From: A sustained deficiency of mitochondrial respiratory complex III induces an apoptotic cell death through the p53-mediated inhibition of pro-survival activities of the activating transcription factor 4

#

Gene symbol

Ensemble ID

a mRNA fold changes

Ref

   

M5

M13

M17

MU13

 

Amino acid transporters

1

Slc7a11

ENSG00000151012

2.41

NC

0.24

4.76

 

2

SLC7A1

ENSG00000139514

1.78

0.67

NC

1.94

 

3

SLC6A9

ENSG00000196517

2.97

NC

NC

3.12

10

4

Slc38a2

ENSG00000134294

1.90

0.49

0.46

1.425

 

5

SLC1A5

ENSG00000105281

1.69

1.27

NC

1.88

 

6

SLC7A5

ENSG00000103257

1.81

1.89

NC

2.72

 

Aminoacyl-tRNA synthetases

7

AARS

ENSG00000090861

1.86

NC

0.60

1.98

 

8

mars

ENSG00000166986

1.53

NC

NC

1.87

 

9

SARS

ENSG00000031698

1.78

NC

0.77

2.10

10

10

Gars

ENSG00000106105

2.03

NC

0.71

1.62

 

11

Yars

ENSG00000134684

1.62

NC

NC

1.71

 

12

eprs

ENSG00000136628

1.43

NC

NC

1.29

 

Other ATF4 targets

13

FGF19

ENSG00000162344

1.97

NC

NC

1.97

27

14

ddit4

ENSG00000168209

4.36

NC

NC

1.95

 

15

JDP2

ENSG00000140044

2.67

NC

NC

2.44

 

16

CTH

ENSG00000116761

1.38

NC

NC

1.45

 

17

Eif1

ENSG00000173812

2.06

0.66

NC

1.41

10

18

EIF4EBP1

ENSG00000187840

1.35

0.78

NC

1.41

 

19

STC2

ENSG00000113739

2.63

NC

0.74

2.1

 

20

GCLC

ENSG00000001084

1.72

NC

NC

1.51

28

21

Psat1

ENSG00000135069

2.5

NC

0.66

2.37

 

22

ANK2

ENSG00000145362

1.93

NC

NC

2.06

 

23

Klf4

ENSG00000136826

2.05

NC

0.66

1.45

 

24

RHBDD1

ENSG00000144468

1.36

0.56

NC

1,41

 

25

Xpot

ENSG00000184575

1.52

NC

0.64

1.55

10

26

FAM129A

ENSG00000135842

2.59

1.95

1.4

3.37

 

27

GPT2

ENSG00000166123

1.59

1.34

NC

1.94

 

28

Arhgef2

ENSG00000116584

1.83

1.58

NC

2.10

 

29

Mid1ip1

ENSG00000165175

1.33

1.25

NC

1.72

 

30

Gtpbp2

ENSG00000172432

2.15

1.30

NC

2.05

 
  1. Abbreviation: NC, no change.
  2. aFold change in mRNA levels according to mRNA-seq data is presented (FDR<0.05).