Table 1 Summary of reads mapping to the Bos taurus reference genome
Samples | Embryo 1 | Embryo 2 | Embryo 3 | Adult 1 | Adult 2 | Adult 3 |
|---|---|---|---|---|---|---|
Raw reads | 111,340,382 | 106,866,166 | 134,501,982 | 139,160,360 | 101,780,186 | 101,084,070 |
Clean reads | 88,317,616 | 80,238,976 | 104,670,312 | 108,467,672 | 85,317,802 | 84,111,208 |
Mapped reads | 54,979,060 | 49,922,182 | 62,333,225 | 88,546,667 | 53,810,383 | 58,188,271 |
Mapping ratio | 68.31% | 68.17% | 70.01% | 84.18% | 83.67% | 84.47% |
Uniquely mapped reads | 50,334,911 | 45,233,401 | 57,170,376 | 86,082,724 | 52,330,653 | 56,687,937 |
Unique mapping ratio | 62.54% | 61.77% | 64.21% | 81.84% | 81.37% | 82.29% |
