Table 1 Global statistics of Chenopodium quinoa genome assembly and annotation

From: A high-quality genome assembly of quinoa provides insights into the molecular basis of salt bladder-based salinity tolerance and the exceptional nutritional value

 

Number

Size

Assembly feature

Estimated genome size

 

1 482 Mb

Total scaffolds (≥ 100 bp)

3 184

1 337 Mb

Scaffold N50

373

1 162 Kb

Longest scaffold

 

5 398 Kb

Total contigs

10 795

1 324 Mb

Contig N50

1 536

268 Kb

Longest contig

 

1 594 Kb

GC content

37.0%

 

Genome annotation

Total repetitive sequences

64.5%

863 Mb

Transposable elements

55.3%

739 Mb

Gene models

54 438

201 Mb

Noncoding RNAs

10 358

1 083 Kb

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