Table 1 Allele frequencies in the African populations in this study and other ethnicities or populations

From: Establishment of a biobank and pharmacogenetics database of African populations

 

CYP2C19

CYP2D6

NAT2

GST

CYP2B6

Population

*2

*3

*2/2

*3

*4

*5

*10

*9

*17

*29

*5

*6

*7

*14

M1 del/del

T1 del/del

*6

Orientals

30

10

2

0

1

6

51

0

0

0

5

25

13

0

55

65

18

Chinese

37

8

1

0

1

6

51

0

0

0

6

31

16

0

58

53

21

Japanese

35

11

1

0

1

3

43

0

0

0

2

19

10

0

44

44

16

Koreans

21

12

0

0

2

6

51

0

0

0

3

19

11

0

53

60

15

Caucasian

15

0

5

2

25

5

2

2

0

0

49

27

2

0

50

15

21

Swedes

17

0

1

3

23

5

1

0

0

0

51

28

2

0

51

20

 

Germans

18

0

2

2

20

2

2

0

0

0

46

27

4

0

51

21

 

American

14

0

2

     

0

 

45

28

2

0

54

15

 

Mixed African

16

1

2

<13

2

4

6

0

30

15

34

20

5

13

30

 

40

African American

25

0

1

<13

7

6

4

1

15

5

30

22

2

9

28

24

47

Tanzanian

18

<1 3

3

0

2

4

4

0

18

20

34

21

3

13

33

25

39

Shona

13

b

2

0

2

4

6

0

34

17

31

21

6

14

24

26

38

Venda

21

0

 

0

3

5

12

0

24

6

39

22

5

11

23

20

36

Ghanaian

  

2

0

7

6

3

0

28

39

49

Ethiopians

14

2

15

0

4

3

9

0

9

Kikuyu

16

0

 

0

1

  

0

33

14

58

24

  

28

25

34

Luo

18

0

 

0

4

 

6

0

23

16

34

22

3

14

29

22

37

Maasai

11

<1 3

 

0

8

 

5

0

18

8

42

27

4

9

16

40

35

Igbo

29

0

 

0

8

 

10

0

14

20

28

29

4

11

23

36

38

Yoruba

10

0

 

0

3

 

7

0

22

10

33

27

3

8

31

35

42

Hausa

12

0

 

0

2

 

13

0

18

10

27

33

3

3

37

42

42

San

12

   

9

  

0

22

2

20

8

  

45

 

40

  1. Abbreviation: glutathione-S-transferase.
  2. The numbers in bold are frequencies obtained in this study, the nonbold are literature data compilations.3 Fifteen SNPs/polymorphisms were analyzed and compared to literature data. The CYP2D6 polymorphisms (*5 and *2/2) were not analyzed in this study, but were included in the stratification analysis. The exact description of the CYP alleles can be found on www.imm.ki.se/CYPalleles.
  3. The frequency of the allele is rare (>1%), a few individuals have been described but constitute a rare occurrence.
  4. Where frequency is 0, so far the allele has not been found in the individuals studied in the respective population.