Abstract
Glucose transporter type 1 deficiency syndrome (GLUT1DS) is a neurometabolic disorder with a complex phenotypic spectrum but simple biomarkers in cerebrospinal fluid. The disorder is caused by impaired glucose transport into the brain resulting from variants in SCL2A1. In 10% of GLUT1DS patients, a genetic diagnosis can not be made. Using whole-genome sequencing, we identified a de novo 5′-UTR variant in SLC2A1, generating a novel translation initiation codon, severely compromising SLC2A1 function. This finding expands our understanding of the disease mechanisms underlying GLUT1DS and encourages further in-depth analysis of SLC2A1 non-coding regions in patients without variants in the coding region.
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References
De Vivo DC, Trifiletti RR, Jacobson RI et al: Defective glucose transport across the blood-brain barrier as a cause of persistent hypoglycorrhachia, seizures, and developmental delay. N Engl J Med 1991; 325: 703–709.
Seidner G, Alvarez MG, Yeh JI et al: GLUT-1 deficiency syndrome caused by haploinsufficiency of the blood-brain barrier hexose carrier. Nat Genet 1998; 18: 188–191.
Leen WG, Klepper J, Verbeek MM et al: Glucose transporter-1 deficiency syndrome: the expanding clinical and genetic spectrum of a treatable disorder. Brain 2010; 133: 655–670.
Hully M, Vuillaumier-Barrot S, Le Bizec C et al: From splitting GLUT1 deficiency syndromes to overlapping phenotypes. Eur J Med Genet 2015; 58: 443–454.
Liu YC, Lee JW, Bellows ST et al: Evaluation of non-coding variation in GLUT1 deficiency. Dev Med Child Neurol 2016; 58: 1295–1302.
Leen WG, Wevers RA, Kamsteeg EJ et al: Cerebrospinal fluid analysis in the workup of GLUT1 deficiency syndrome: a systematic review. JAMA Neurol 2013; 70: 1440–1444.
Yang H, Wang D, Engelstad K et al: Glut1 deficiency syndrome and erythrocyte glucose uptake assay. Ann Neurol 2011; 70: 996–1005.
Hashimoto N, Kagitani-Shimono K, Sakai N et al: SLC2A1 gene analysis of Japanese patients with glucose transporter 1 deficiency syndrome. J Hum Genet 2011; 56: 846–851.
Klepper J : Absence of SLC2A1 mutations does not exclude Glut1 deficiency syndrome. Neuropediatrics 2013; 44: 235–236.
de Ligt J, Willemsen MH, van Bon BW et al: Diagnostic exome sequencing in persons with severe intellectual disability. N Engl J Med 2012; 367: 1921–1929.
Gilissen C, Hehir-Kwa JY, Thung DT et al: Genome sequencing identifies major causes of severe intellectual disability. Nature 2014; 511: 344–347.
Salamov AA, Nishikawa T, Swindells MB : Assessing protein coding region integrity in cDNA sequencing projects. Bioinformatics 1998; 14: 384–390.
Hornig NC, de Beaufort C, Denzer F et al: A recurrent germline mutation in the 5′UTR of the androgen receptor causes complete androgen insensitivity by activating aberrant uORF translation. PLoS One 2016; 11: e0154158.
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We thank the patients and their parents, as well as the referring physicians for their contributions to this study.
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JK has received speakers honoraria and travel costs from Nutricia GmbH, Eerlangen, Germany and Vitaflo Pharma GmbH, Bad Homburg, Germany. The remaining authors declare no conflict of interest.
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Willemsen, M., Vissers, L., Verbeek, M. et al. Upstream SLC2A1 translation initiation causes GLUT1 deficiency syndrome. Eur J Hum Genet 25, 771–774 (2017). https://doi.org/10.1038/ejhg.2017.45
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DOI: https://doi.org/10.1038/ejhg.2017.45
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