Table 3 Additional recessive damaging variants in nonobstructive azoospermia (NOA) genes discovered in idiopathic cohort sequenced at the point of care

From: Point-of-care whole-exome sequencing of idiopathic male infertility

Study population

Gene panel source a

Subject ID b

Gene symbol

Predicted effect on protein c

No. individuals d (%)

Nonobstructive azoospermia (n = 75)

Current study

I042

TEX14

p.Ser1255fs

 
 

Current study

I060

TEX14

Splice (c.556-5A>C)

 
 

Current study

I074

NANOS2

p.Met1?

4 (5%)

 

Current study

I030

WNK3

p.Glu913Lyse

 
 

Previous

I064

TEX11

p.Ile118Ser

 
 

Previous

I065

UTP14C

p.Pro547Ser

 
 

Previous

I181

ART3

p.Cys256fs

 
 

Previous

I018

AR

p.Ser176Arg

 
 

Previous

I011

FKBP6

Splice (c.893+4A>G)

6 (9%)

 

Previous

I071

XRCC1

p.Glu512Gln

 
     

Total 10 (13.3%)

Fertile men (n = 74)

N/A

N/A

N/A

N/A

0 (0%)

 

N/A

N/A

N/A

N/A

Total 0 (0%)

  1. Candidate deleterious variants in 62 NOA genes detected in idiopathic NOA cohort and fertile controls. Denoted in each cohort is the individual harboring candidate pathogenic variant(s), including the altered gene and the exact amino acid alteration.
  2. aSource of gene selected for targeted variant discovery. Current study includes 5 candidate genes discovered from familial cohort. Previous studies contain 57 genes in which point mutations or exonic deletions are found in azoospermic men (see Supplementary Tables S11, S12 online for all genes tested).
  3. bSubject ID divided by two groups: idiopathic (I) NOA (see Supplementary Tables S3, S6 online for clinical details and sequencing metrics for these individuals); fertile men (F; see Supplementary Tables S4, S7 online for fecundity details and sequencing metrics for these individuals).
  4. cPredicted effect is displayed in Human Genome Variation Society format. Amino acid alterations are displayed in p. notation whereas splice variants are in c. notation.
  5. dTally of number of individuals with deleterious variants in each gene panel, as well as percentage of total.
  6. eThis variant is hemizygous, as WNK3 is on the X chromosome.