Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

Heredity
  • View all journals
  • Search
  • Log in
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. heredity
  3. original article
  4. article
Numerical studies of the frequency trajectories in the process of fixation of null genes at duplicated loci
Download PDF
Download PDF
  • Original Article
  • Published: 01 February 1981

Numerical studies of the frequency trajectories in the process of fixation of null genes at duplicated loci

  • Takeo Maruyama1 &
  • Naoyuki Takahata1 

Heredity volume 46, pages 49–57 (1981)Cite this article

  • 632 Accesses

  • 20 Citations

  • Metrics details

Summary

A new numerical method, based on the stochastic differential equations, has been applied to the problem of the fixation of null alleles at duplicated loci. The results reported here were obtained under the assumption that individuals carrying homozygous null genes at both of the duplicated loci are lethal, but all the other genotypes are normal. The mean and median time for null alleles to fix can vary from 2N to 100N or more, depending on the mutation rate and the population size, where N is the population size. Linkage has strong effects on the fate of null genes in the populations, if 2Nc is of the order of 100 or less (c = recombination value). When the linkage is loose the frequencies of null genes in the course of fixation stay in a region where the frequency of the null gene is very low at one of the two duplicated loci. If the two loci are tightly linked, the fate of null genes at duplicated loci is determined by the mutation pressure and the random genetic drift, and selection plays a minor role. In these cases, the fixation time is invariably reduced and the trajectories can cover the entire region where the sum of null allele frequencies does not exceed unity. This makes the prediction that there should be rapid evolution of linked silent genes and pseudo-genes, and that silent DNA might be found close to functional genes.

Similar content being viewed by others

Long-range linkage effects in adapting sexual populations

Article Open access 01 August 2023

Effects of mating system and adaptedness on the evolution of fitness and mtDNA copy number in mitonuclear mismatched C. elegans

Article Open access 28 July 2025

Linkage disequilibrium under polysomic inheritance

Article 04 January 2022

Article PDF

References

  • Allendorf, F W. 1979. Rapid loss of duplicate gene expression by natural selection. Heredity, 43, 247–258.

    Article  Google Scholar 

  • Bailey, C S, Poulter, R T M, and Stockwell, P A. 1978. Gene duplication in tetraploid fish: Model for gene silencing at unlinked duplicated loci. Proc Natl Acad Sci USA, 75, 5575–5579.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fedoroff, N V, and Brown, D D. 1978. The nucleotide sequence of the repeating unit in oocyte 5s ribosomal DNA of Xenopus laevis. Cold Spring Harbor Symposia Vol. XLII, 1195–1200.

    Article  Google Scholar 

  • Ferris, S D, Portnoy, S L, and Whitt, G S. 1979. The role of speciation and divergence time in the loss of duplicate gene expression. Theoret Pop Biol, 15, 114–139.

    Article  Google Scholar 

  • Ferris, S D, and Whitt, G S. 1979. Evolution of the differential regulation of duplicate genes after polyploidization. Journal of Molecular Evolution, 12, 267–317.

    Article  CAS  PubMed  Google Scholar 

  • Hill, W G. 1974. Estimation of linkage disequilibrium in randomly mating populations. Heredity, 33, 229–239.

    Article  CAS  PubMed  Google Scholar 

  • Hill, W G. 1975. Linkage disequilibrium among multiple neutral alleles produced by mutation in finite population. Theoret Pop Biol, 8, 117–126.

    Article  CAS  Google Scholar 

  • Hill, W G, and Robertson, A. 1968. Linkage disequilibrium in finite populations. Theoret Pop Biol, 38, 226–231.

    CAS  Google Scholar 

  • Hood, L, Campbell, J H, and Elgin, S C R. 1975. The organization, expression, and evolution of antibody genes and other multigene families. Annual Review of Genetics, 9, 305–353.

    Article  CAS  PubMed  Google Scholar 

  • Itô, K. 1944. Stochastic integral. Proceedings of the Imperial Academy, 20, 519–524.

    Article  Google Scholar 

  • Itoh, Y. 1979. Random collision process of oriented graph. Institute of Statistical Mechanics (Japan), Research Memorandum, 154.

  • Kimura, M. 1980. Average time until fixation of a mutant allele in a finite population under continued mutation pressure: Studies by analytical, numerical and pseudo-sampling methods. Proc Natl Acad Sci USA, 77, 522–526.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kimura, M, and King, J L. 1979. Fixation of a deleterious allele at one of two “duplicate” loci by mutation pressure and random drift. Proc Natl Acad Sci USA, 76, 2758–2861.

    Google Scholar 

  • Li, W H. 1980. Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes. Genetics, 95, 237–258.

    CAS  PubMed  PubMed Central  Google Scholar 

  • McShane, E J. 1974. Stochastic Calculus and Stochastic Models. Academic Press, New York, San Francisco, London.

    Google Scholar 

  • Nishioka, Y, Leder, A, and Leder, P. 1980. An unusual alpha globin-like gene that has cleanly lost both globin intervening sequences. Proc Natl Acad Sci USA, 77, 2806–2809.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ohta, T. 1980. Evolution and Variation of Multigene Families Lecture Notes in Biomathematics Vol. 37, Springer-Verlag, Berlin, Heidelberg, New York.

    Book  Google Scholar 

  • Ohta, T, and Kimura, M. 1969. Linkage disequilibrium due to random genetic drift. Genet Res Camb, 13, 47–55.

    Article  Google Scholar 

  • Ohta, T, and Kimura, M. 1971. Linkage disequilibrium between two segregating nucleotide sites under steady flux of mutations in a finite population. Genetics, 68, 571–580.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Pederson, D G. 1973. Note: An approximate method of sampling a multinomial population. Biometrics, 29, 814–821.

    Article  CAS  PubMed  Google Scholar 

  • Storokhod, A V. 1965. Studies in the Theory of Random Processes. Addison-Wesley Pubishing Company, Inc., Reading, Massachusetts.

    Google Scholar 

  • Takahata, N, and Maruyama, T. 1979. Polymorphism and loss of duplicate gene expression: A theoretical study with application to tetraploid fish. Proc Natl Acad Sci USA, 76, 4521–4525.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Watanabe, S. 1971. On stochastic differential equations for multi-dimensional diffusion processes with boundary conditions. Journal of Mathematics of Kyoto University, 11, 169–180.

    Article  Google Scholar 

  • Wong, E, and Zakai, M. 1965. On the convergence of ordinary integrals to stochastic integrals. Annals Mathematical Statistics, 36, 1560–1564.

    Article  Google Scholar 

  • Zimmer, E A, Martin, S L, Beverley, S M, Kan, Y W, and Wilson, A C. 1980. Rapid duplication and loss of genes coding for the α chains of hemoglobin. Proc Natl Acad Sci USA, 77, 2158–2162.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. National Institute of Genetics, Mishima, 411, Japan

    Takeo Maruyama & Naoyuki Takahata

Authors
  1. Takeo Maruyama
    View author publications

    Search author on:PubMed Google Scholar

  2. Naoyuki Takahata
    View author publications

    Search author on:PubMed Google Scholar

Additional information

Contribution No. 1333 from the National Institute of Genetics, Mishima, Shizouka-ken, 411 Japan.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Maruyama, T., Takahata, N. Numerical studies of the frequency trajectories in the process of fixation of null genes at duplicated loci. Heredity 46, 49–57 (1981). https://doi.org/10.1038/hdy.1981.5

Download citation

  • Received: 07 July 1980

  • Issue date: 01 February 1981

  • DOI: https://doi.org/10.1038/hdy.1981.5

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

This article is cited by

  • Mean time to resolution of gene duplication

    • Cheng Xue
    • Yunxin Fu

    Genetica (2009)

  • Genetic analysis of inbreeding depression caused by chlorophyll-deficient lethals in Mimulus guttatus

    • John H Willis

    Heredity (1992)

  • Random collision model for random genetic drift and stochastic difference equation

    • Yoshiaki Itoh

    Annals of the Institute of Statistical Mathematics (1984)

Download PDF

Advertisement

Explore content

  • Research articles
  • Reviews & Analysis
  • News & Comment
  • Podcasts
  • Current issue
  • Collections
  • Follow us on X
  • Sign up for alerts
  • RSS feed

About the journal

  • Journal Information
  • Open access publishing
  • About the Editors
  • Contact
  • About the Partner
  • For Advertisers
  • Subscribe

Publish with us

  • For Authors & Referees
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

Heredity (Heredity)

ISSN 1365-2540 (online)

ISSN 0018-067X (print)

nature.com sitemap

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited