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Genetic variation at traditional and novel allozyme loci, applied to interactions between wild and reared Salmo salar L. (Atlantic salmon)
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  • Original Article
  • Published: 01 December 1995

Genetic variation at traditional and novel allozyme loci, applied to interactions between wild and reared Salmo salar L. (Atlantic salmon)

  • Iain F Wilson1,
  • Elizabeth A Bourke1 &
  • Thomas F Cross1 

Heredity volume 75, pages 578–588 (1995)Cite this article

  • 634 Accesses

  • 20 Citations

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Abstract

This study aimed to increase the number of allozyme loci which may be screened in the Atlantic salmon, Salmo salar L., particularly for use in investigating interactions between wild populations and reared strains. Three samples of wild salmon from Ireland, Scotland and Spain and one from a farmed strain of Norwegian origin were used as index samples. Other Irish samples were used in technique development. Ninety-one enzyme loci were resolved, including 21 not previously screened in S. salar. Thirteen loci were found to be variable, including three novel polymorphic loci (EST-5*, FBALD-3* and TPI-3*). Two novel alleles (sAAT-1,2*130 and sAAT-3*83) were also detected. Levels of variability were lowest in the Spanish sample. The farmed strain had levels of H̄ and P̄ lower than those in the two other wild samples. Mean levels of H̄ and P̄ were higher than those reported previously in studies that used a smaller number of loci but confirm S. salar as one of the less variable salmonids. Nine of the 13 variable loci showed significant population differentiation, the most discriminatory being mMEP-2*. The discriminatory power of the novel variable loci was in the middle of the range of those of the other loci. D̄ values reflected the relative geographical locations from which the samples originated. There were significant clines in allele frequencies at mMEP-2* and TPI-3*. Fourteen enzyme loci including six variable loci were resolved in adipose fin.

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References

  • Aebersold, P B, Winans, G A, Teel, D J, Milner, G B, and Utter, F M. 1987. Manual for Starch Gel Electrophoresis: Complete Procedures for Detection of Genetic Variation. U. S. Department of Commerce, NOAA Technical report NMFS, no. 61. Seattle, WA.

  • Allendorf, F, Knudsen, K L, and Phelps, S R. 1982. Identification of a gene regulating the tissue expression of a phosphoglucomutase locus in rainbow trout. Genetics, 102, 259–268.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Black, W C, and Krafsur, E S. 1985. A FORTRAN program for the calculation and analysis of two-locus linkage disequilibrium coefficients. Theor Appl Genet, 70, 491–496.

    Article  PubMed  Google Scholar 

  • Blanco, G, Sánchez, J A, Vázquez, E, Rubio, J, and Utter, F M. 1992. Genetic differentiation among natural European populations of Atlantic salmon, Salmo salar L., from drainages of the Atlantic Ocean. Anim Genet, 23, 11–18.

    Article  CAS  PubMed  Google Scholar 

  • Campton, D. 1987. Natural hybridisation and introgression in fishes: methods of detection and genetics interpretations. In: Ryman, N. and Utter, F. (eds) Population Genetics and Fishery Management, pp. 161–192. University of Washington Press, Seattle.

    Google Scholar 

  • Clayton, J W, and Tretiak, D N. 1972. Amine-citrate buffers for ph control in starch gel electrophoresis. J Fish Res Board Can, 29, 1169–1172.

    Article  CAS  Google Scholar 

  • Cross, T F. 1991. Potential genetic interactions between reared and wild fish in Europe, with particular emphasis on Atlantic salmon. In: De Pauw, N. and Joyce, J. (eds) Aquaculture and the Environment, pp. 299–308. European Aquaculture Society Special Publication no. 16 Gant, Belgium.

    Google Scholar 

  • Cross, T F, and Payne, R H. 1977. NADP-isocitrate dehydrogenase polymorphism in the Atlantic salmon Salmo salar. J Fish Biol, 11, 493–496.

    Article  CAS  Google Scholar 

  • Cross, T F, and Ward, R D. 1980. Protein variation and duplicate loci in the Atlantic salmon, Salmo salar L. Genet Res, 36, 147–165.

    Article  CAS  PubMed  Google Scholar 

  • Cross, T F, Ward, R D, and Abreu-Grobois, A. 1979. Duplicate loci and allelic variation for mitochondrial malic enzyme in the Atlantic salmon, Salmo salar L. Comp Biochem Physiol, 62B, 403–406.

    CAS  Google Scholar 

  • Elo, K, Vuorinen, J A, and Niemelä, E. 1994. Genetic resources of Atlantic salmon (Salmo salar L.) in Teno and Näätämö Rivers, northernmost Europe. Hereditas, 120, 19–28.

    Article  Google Scholar 

  • Ferguson, A. 1980. Biochemical Systematics and Evolution. Blackie, Glasgow.

    Google Scholar 

  • Garcia De Leániz, C, Verspoor, E, and Hawkins, A D. 1989. Genetic determination of the contribution of stocked and wild Atlantic salmon, Salmo salar L., to the angling fisheries in two Spanish rivers. J Fish Biol, 35 (Suppl. A), 261–270.

    Article  Google Scholar 

  • Hillis, D M, and Moritz, C. 1990. Molecular Systematics. Sinauer Associates, Sunderland, MA.

    Google Scholar 

  • Hindar, K, Ryman, N, and Utter, F. 1991. Genetic effects of aquaculture on natural fish populations. Can J Fish Aquat Sci, 48, 945–957.

    Article  Google Scholar 

  • Holmes, R S, and Masters, C J. 1970. Epigenetic inter-conversions of the multiple forms of mouse liver cata-lase. FEBS Lett, 11, 45–48.

    Article  CAS  PubMed  Google Scholar 

  • Johnson, K. 1984. Protein Variation in the Salmoninae: Genetic Interpretations of Electrophoretic Banding Patterns, Linkage Associations Among Loci, and Evolutionary Relationships Among Species. Ph.D. Thesis, Pennsylvania State University.

    Google Scholar 

  • Jordan, W C. 1990. Gene Flow Among Atlantic Salmon (Salmo salar) Populations in Scotland. Ph. D. Thesis, The Queen's University of Belfast, Northern Ireland.

  • Kazakov, R V, and Titov, S F. 1991. Geographical patterns in the population genetics of Atlantic salmon, Salmo salar L., on U.S.S.R. territory, as evidence for colonization routes. J Fish Biol, 39, 1–6.

    Article  Google Scholar 

  • Khanna, N D, Juneja, R K, Larsson, B, and Gähne, B. 1975a. Electrophoretic studies on proteins and enzymes in the Atlantic salmon, Salmo salar, L. Swedish J Agric Res, 5, 185–192.

    CAS  Google Scholar 

  • Khanna, N D, Juneja, R K, Larsson, B, and Gähne, B. 1975b. Electrophoretic studies on esterases in the Atlantic salmon, Salmo salar, L. Swedish J Agric Res, 5, 193–197.

    CAS  Google Scholar 

  • Lewontin, R C, and Krakauer, J. 1973. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics, 74, 175–195.

    CAS  PubMed  PubMed Central  Google Scholar 

  • McElligott, E A. 1987. A Genetic Investigation of the Population Structure of Wild and Hatchery Reared Atlantic Salmon (Salmo salar L.) in Ireland. M.Sc. Thesis, University College Cork, Ireland.

  • Maitland, P S. 1989. The Genetic Impact of Farmed Atlantic Salmon on Wild Populations. Nature Conservancy Council, Edinburgh.

    Google Scholar 

  • Moffett, I J J, and Crozier, W W. 1991. Genetic marker identification in Atlantic salmon (Salmo salar L.) by electrophoretic analysis of low risk tissues. J Fish Biol, 39, 609–611.

    Article  Google Scholar 

  • Morán, P, Pendás, A M, García-Vázquez, E, Izouierdo, J T, and Rutherford, D T. 1994. Electtophoretic assessment of the contribution of transplanted Scottish Atlantic salmon (Salmo salar) to the Esva River (northern Spain). Can J Fish Aquat Sci, 51, 248–252.

    Article  Google Scholar 

  • Morizot, D C, and Schmidt, M E. 1990. Starch gel electrophoresis and histochemical visualization of proteins. In: Whitmore, D. H. (ed.) Electrophoretic and Isoelectric Focusing Techniques in Fisheries Management, pp. 23–80. CRC Press, Boca Raton, FL.

    Google Scholar 

  • Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583–590.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Payne, R H, Child, A R, and Forrest, A. 1971. Geographical variation in the Atlantic salmon. Nature, 231, 250–252.

    Article  CAS  PubMed  Google Scholar 

  • Pella, J J, and Milner, G B. 1987. Use of genetic marks in stock composition analysis. In: Ryman, N. and Utter F. (eds) Population Genetics and Fishery Management, pp. 247–276. University of Washington Press, Seattle.

    Google Scholar 

  • Ridgway, G J, Sherburne, S W, and Lewis, R D. 1970. Polymorphism in the esterases of Atlantic herring. Trans Am Fish Soc, 99, 147–151.

    Article  CAS  Google Scholar 

  • Sánchez, J A, Blanco, G, Vazquez, E, Garcia, E, and Rubio, J. 1991. Allozyme variation in natural populations of Atlantic salmon in Asturias (northern Spain). Aquaculture, 93, 291–298.

    Article  Google Scholar 

  • Schaal, B A, and Anderson, W W. 1974. An Outline of Techniques for Starch Gel Electrophoresis of Enzymes from the American Oyster Crassostrea virginica Gmelin. Technical report of the Georgia Marine Science Center, no. 74–3 Skidaway Island, GA.

  • Selander, R K, Smith, M H, Yang, S Y, Johnson, W E, and Gentry, J B. 1971. Biochemical polymorphism and systematics in the genus Peromyscus. I. Variation in the old field mouse (Peromyscus polionotus). Stud Genetics VI Univ Texas Publ, 7103, 49–90.

    Google Scholar 

  • Shaklee, J B, and Keenan, C P. 1986. A Practical Laboratory Guide to the Techniques and Methodology of Electrophoresis and its Application to Fish Fillet Identification Report no. 177, CSIRO Marine Laboratories, Hobart, Tas., Australia.

    Google Scholar 

  • Shaklee, J B, Allendorf, F W, Morizot, D C, and Whitt, G S. 1990. Gene nomenclature for protein-coding loci in fish. Trans Am Fish Soc, 119, 2–15.

    Article  CAS  Google Scholar 

  • Shaklee, J B, Klaybor, D C, Young, S, and White, B A. 1991. Genetic stock structure of odd-year pink salmon (Oncorhynchus gorbuscha, Walbaum) from Washington and British Columbia and potential mixed-stock fisheries applications. J Fish Biol, 39 (Suppl. A), 21–34.

    Article  Google Scholar 

  • Skaala, Ø, Dahle, G, Jørstad, K E, and Nævdal, G. 1990. Interactions between natural and farmed fish populations: information from genetic markers. J Fish Biol, 36, 449–460.

    Article  Google Scholar 

  • Ståhl, G. 1981. Genetic differentiation among natural populations of Atlantic salmon (Salmo salar) in Northern Europe. In: Ryman, N. (ed.) Fish Gene Pools, pp. 95–105. Ecological Bulletins, Stockholm, no. 34. Editorial Service, FRN. Stockholm, Sweden.

    Google Scholar 

  • Ståhl, G. 1987. Genetic population structure of Atlantic salmon. In: Ryman, N. and Utter, F. (eds) Population Genetics and Fishery Management, pp. 121–140. University of Washington Press, Seattle.

    Google Scholar 

  • Swofford, D L, and Selander, R B. 1981. BIOSYS-1. A Computer Program for the Analysis of Allelic Variation in Genetics Users Manual. Department of Genetics and Development, University of Illinois at Urbana-Cham-paign, IL.

    Google Scholar 

  • Torrissen, K R. 1987. Genetic variation of trypsin-like isozymes correlated to fish size of Atlantic salmon (Salmo salar). Aquaculture, 62, 1–10.

    Article  CAS  Google Scholar 

  • Verspoor, E. 1988a. Reduced genetic variability in first-generation hatchery populations of Atlantic salmon (Salmo salar). Can J Fish Aquat Sci, 45, 1686–1690.

    Article  Google Scholar 

  • Verspoor, E. 1988b. Identification of stocks in the Atlantic salmon. In: Stroud, R. H. (ed.) Proceedings of the Symposium on Future Atlantic Salmon Management, pp. 37–46. Marine Recreational Fisheries Series, National Coalition for Marine Conservation, Savannah, GA.

    Google Scholar 

  • Verspoor, E, and Jordan, W C. 1989. Genetic variation at the Me-2 locus in the Atlantic salmon within and between rivers: evidence for its selective maintenance. J Fish Biol, 35, 205–213.

    Article  Google Scholar 

  • Verspoor, E, and Jordan, W C. 1994. Detection of an NAD+-dependent malic enzyme locus in the Atlantic salmon Salmo salar and other salmonid fish. Biochem Genet, 32, 105–117.

    Article  CAS  PubMed  Google Scholar 

  • Verspoor, E, and Reddin, D G. 1989. A Model for the Classification of Atlantic salmon Salmo salar to Continent of Origin Using Genetic Protein Variation. ICES CM 1989/North Atlantic Salmon Working Group. The International Council for the Exploration of the Seas, Copenhagen, Denmark.

  • Vuorinen, J, and Piironen, J. 1984. Electrophoretic identification of Atlantic salmon (Salmo salar), brown trout (5. trutta), and their hybrids. Can J Fish Aquat Sci, 41, 1834–1837.

    Article  Google Scholar 

  • Weir, B S. 1990. Genetic Data Analysis. Sinauer Associates, Sunderland, MA.

    Google Scholar 

  • Wilson, I F, Bourke, E A, and Cross, T F. 1995. A triose-phosphate isomerase polymorphism in the Atlantic salmon, Salmo salar L. Biochem Genet, 33, 25–33.

    Article  CAS  PubMed  Google Scholar 

  • Workman, P L, and Niswander, J D. 1970. Population studies on south-western Indian tribes. II. Local genetic differentiation in the Papago. Am J Hum Genet, 22, 24–49.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wright, S. 1978. Evolution and the Genetics of Populations, 4, Variability Within and Among Natural Populations. University of Chicago Press, Chicago.

    Google Scholar 

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Acknowledgements

We thank the following for assistance: James Shaklee and the staff of the Washington Department of Fisheries; Michael Fanning and the staff of the Southern Regional Fisheries Board; Walter Crozier; Ken Bond, Nora Buttimer, Liam Corby, Emily Keating, Bob McNamara, Sandy O'Driscoll and Gertjan van Weeghel. This study was entirely supported by EC grant FAR MA-2-480.

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Authors and Affiliations

  1. Department of Zoology, Lee Maltings, Prospect Row, University College, Cork, Ireland

    Iain F Wilson, Elizabeth A Bourke & Thomas F Cross

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  1. Iain F Wilson
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  2. Elizabeth A Bourke
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Wilson, I., Bourke, E. & Cross, T. Genetic variation at traditional and novel allozyme loci, applied to interactions between wild and reared Salmo salar L. (Atlantic salmon). Heredity 75, 578–588 (1995). https://doi.org/10.1038/hdy.1995.177

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  • Received: 13 March 1995

  • Issue date: 01 December 1995

  • DOI: https://doi.org/10.1038/hdy.1995.177

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Keywords

  • farmed line
  • genetic impact
  • geographical differentiation
  • novel allozymes
  • Salmo salar
  • wild populations

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