Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

Heredity
  • View all journals
  • Search
  • Log in
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. heredity
  3. original article
  4. article
S-allele diversity in a natural population of Physalis crassifolia (Solanaceae) (ground cherry) assessed by RT-PCR
Download PDF
Download PDF
  • Original Article
  • Published: 01 May 1996

S-allele diversity in a natural population of Physalis crassifolia (Solanaceae) (ground cherry) assessed by RT-PCR

  • Adam D Richman1,
  • Marcy K Uyenoyama2 &
  • Joshua R Kohn1 

Heredity volume 76, pages 497–505 (1996)Cite this article

  • 816 Accesses

  • 43 Citations

  • Metrics details

Abstract

Allelic diversity at the self-incompatibility (S-) locus in the ground cherry, Physalis crassifolia (Solanaceae), was surveyed in a natural population occurring in Deep Canyon, CA, using a molecular assay to determine the genotype of individual plants. A total of 28 different S-alleles were identified and sequenced from a sample of 22 plants. All plants examined were heterozygous, as expected under gametophytic self-incompatibility (GSI). The estimated number of alleles in this population is 43–44, comparable to allelic diversity reported for other species, as determined by the standard diallel crossing method. Allele frequencies in the sample deviated from the expectation of equal frequency under GSI; it is suggested that this deviation may result from sampling of related individuals. Molecular analysis of genotypes within single pollen donor families indicates that, for all alleles examined, segregation is consistent with predictions for single-locus GSI. The implications of a reliable and efficient molecular assay for determining the S-genotype of plants are discussed.

Similar content being viewed by others

The identification of the Rosa S-locus and implications on the evolution of the Rosaceae gametophytic self-incompatibility systems

Article Open access 12 February 2021

Ecological factors influence balancing selection on leaf chemical profiles of a wildflower

Article 17 June 2021

Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition

Article 14 March 2022

Article PDF

References

  • Ai, Y, Singh, A, Coleman, C E, Ioerger, T R, Kheyrpour, A, and Kao, T-H. 1990. Self-incompatibility in Petunia inflata: isolation and characterization of cDNAs encoding three S-allele-associated proteins. Sex Plant Repro, 3, 130–138.

    Article  Google Scholar 

  • Broothaerts, W, Janssens, G A, Proost, P, and Broekaert, W F. 1995. cDNA cloning and molecular analysis of two self-incompatibility alleles from apple. Plant Mol Biol, 27, 499–511.

    Article  CAS  PubMed  Google Scholar 

  • Campbell, J M, and Lawrence, M J. 1981. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. II. The number and frequency of S-alleles in a natural population (R106. Heredity, 46, 81–90.

    Article  Google Scholar 

  • Emerson, S. 1938. The genetics of self-incompatibility in Oenothera organensis. Evolution, 23, 190–202.

    CAS  Google Scholar 

  • Emerson, S. 1939. A preliminary survey of the Oenothera organensis population. Evolution, 24, 524–537.

    CAS  Google Scholar 

  • Ioerger, T R, Gohlke, J R, Xu, B, and Kao, T-H. 1991. Primary structural features of the self-incompatibility protein in Solanaceae. Sex Plant Repro, 4, 81–87.

    Article  Google Scholar 

  • Jost, W, Bak, H, Glund, K, Terpstra, P, and Beinteme, J J. 1991. Amino acid sequence of an extracellular, phosphate-starvation-induced ribonuclease from cultured tomato (Lycopersicon esculentum) cells. Eur J Biochem, 198, 1–6.

    Article  CAS  PubMed  Google Scholar 

  • Kheyr-Pour, A, Bintrim, S B, Ioerger, T R, Remy, R, Hammond, S A, and Kao, T-H. 1990. Sequence diversity of pistil S-proteins associated with gametophytic self-incompatibility in Nicotiana alata. Sex Plant Repro, 3, 88–97.

    Article  Google Scholar 

  • Lawrence, M J. 1975. The genetics of self-incompatibility in Papaver rhoeas. Proc R Soc B, 188, 275–285.

    Google Scholar 

  • Lawrence, M J, and O'Donnell, S. 1981. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. III. The number and frequency of S-alleles in two further natural populations (R102 and R104. Heredity, 47, 53–61.

    Article  Google Scholar 

  • Levin, D A. 1993. S-gene polymorphism in Phlox drummondii. Heredity, 71, 193–198.

    Article  CAS  Google Scholar 

  • Mantel, N. 1974. Approaches to a health research occupancy problem. Biometrics, 30, 355–362.

    Article  CAS  PubMed  Google Scholar 

  • O'Donnell, S, and Lawrence, M J. 1984. The population genetics of the self-incompatibility polymorphism in Papaver rhoeas IV. The estimation of the number of alleles in a population. Heredity, 53, 495–507.

    Article  Google Scholar 

  • Ockendon, D J. 1974. Distribution of self-incompatibility alleles and breeding structure of open-pollinated cultivars of Brussels sprouts. Heredity, 33, 159–171.

    Article  Google Scholar 

  • Pandey, K K. 1957. Genetics of self-incompatibility in Physalis ixocarpa Brot. -a new system. Am J Bot, 44, 879–887.

    Article  Google Scholar 

  • Paxman, G J. 1963. The maximum likelihood estimation of the number of self-sterility alleles in a population. Genetics, 48, 1029–1032.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Richman, A D, Kao, T-H, Schaeffer, S W, and Uyenoyama, M K. 1995. S-allele sequence diversity in natural populations of Solanum carolinense. (Horsenettle). Heredity, 75, 405–415.

    Article  CAS  PubMed  Google Scholar 

  • Royo, J, Kowyama, Y, and Clarke, A E. 1994. Cloning and nucleotide sequence of two S-RNases from Lycopersicon peruvianum (L.) Mill. Pl Physiol, 105, 751–752.

    Article  CAS  Google Scholar 

  • Takahata, N. 1993a. Allelic genealogy and human evolution. Mol Biol Evol, 10, 2–22.

    CAS  PubMed  Google Scholar 

  • Takahata, N. 1993b. Evolutionary genetics of human paleo-populations. In: Takahata, N. and Clark, A. G. (eds) Mechanisms of Molecular Evolution, pp. 1–21. Sinauer Associates, Sunderland, MA.

    Google Scholar 

  • Thompson, J D, Higgins, D G, and Gibson, T J. 1994. CLUSTAL w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res, 22, 4673–4680.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vekemans, X, and Slatkin, M. 1994. Gene and allelic genealogies at a gametophytic self-incompatibility locus. Genetics, 137, 1157–1165.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wright, S. 1960. On the number of self-incompatibility alleles maintained in equilibrium by a given mutation rate in population of a given size: a reexamination. Biometrics, 16, 61–85.

    Article  Google Scholar 

  • Xu, B, Mu, J, Nevins, D L, Grun, P, and Kao, T-H. 1990. Cloning and sequencing of cDNAs encoding two self-incompatibility associated proteins in Solanum chacoense. Mol Gen Genet, 224 341–346.

    Article  CAS  PubMed  Google Scholar 

  • Yokoyama, S, and Hetherington, L E. 1982. The expected number of self-incompatibility alleles in finite plant populations. Heredity, 48, 299–303.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Department of Biology 0116, University of California at San Diego, La Jolla, 92093-0116, CA, USA

    Adam D Richman & Joshua R Kohn

  2. Department of Zoology, Box 90325, Duke University, Durham, 27708-0325, NC, USA

    Marcy K Uyenoyama

Authors
  1. Adam D Richman
    View author publications

    Search author on:PubMed Google Scholar

  2. Marcy K Uyenoyama
    View author publications

    Search author on:PubMed Google Scholar

  3. Joshua R Kohn
    View author publications

    Search author on:PubMed Google Scholar

Rights and permissions

Reprints and permissions

About this article

Cite this article

Richman, A., Uyenoyama, M. & Kohn, J. S-allele diversity in a natural population of Physalis crassifolia (Solanaceae) (ground cherry) assessed by RT-PCR. Heredity 76, 497–505 (1996). https://doi.org/10.1038/hdy.1996.72

Download citation

  • Received: 09 August 1995

  • Issue date: 01 May 1996

  • DOI: https://doi.org/10.1038/hdy.1996.72

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Keywords

  • frequency-dependent selection
  • Physalis crassifolia
  • RT-PCR
  • S-locus
  • self-incompatibility

This article is cited by

  • Development of PCR-based markers for the identification of the S-RNase alleles in wild potato species

    • Olga Marcellán
    • Alberto Acevedo

    Euphytica (2012)

  • Functional gametophytic self-incompatibility in a peripheral population of Solanum peruvianum (Solanaceae)

    • J S Miller
    • J L Kostyun

    Heredity (2011)

  • The genetic location of the self-incompatibility locus in white clover (Trifolium repens L.)

    • Nora M. Casey
    • Dan Milbourne
    • Daniel Thorogood

    Theoretical and Applied Genetics (2010)

  • Molecular and genetic characterization of novel S-RNases from a natural population of Nicotiana alata

    • Juan A. Roldán
    • Rodrigo Quiroga
    • Ariel Goldraij

    Plant Cell Reports (2010)

  • Population size, self-incompatibility and genetic rescue in diploid and tetraploid races of Rutidosis leptorrhynchoides (Asteraceae)

    • M Pickup
    • A G Young

    Heredity (2008)

Download PDF

Advertisement

Explore content

  • Research articles
  • Reviews & Analysis
  • News & Comment
  • Podcasts
  • Current issue
  • Collections
  • Follow us on Twitter
  • Sign up for alerts
  • RSS feed

About the journal

  • Journal Information
  • Open access publishing
  • About the Editors
  • Contact
  • About the Partner
  • For Advertisers
  • Subscribe

Publish with us

  • For Authors & Referees
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

Heredity (Heredity)

ISSN 1365-2540 (online)

ISSN 0018-067X (print)

nature.com sitemap

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2025 Springer Nature Limited