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Segregation studies and linkage analysis of Atlantic salmon microsatellites using haploid genetics
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  • Original Article
  • Published: 01 June 1997

Segregation studies and linkage analysis of Atlantic salmon microsatellites using haploid genetics

  • Audun Slettan1,
  • Ingrid Olsaker1 &
  • Øystein Lie1 

Heredity volume 78, pages 620–627 (1997)Cite this article

  • 938 Accesses

  • 51 Citations

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Abstract

A genetic marker map of Atlantic salmon would facilitate the identification of loci influencing economically important traits. In the present paper we describe five new Atlantic salmon microsatellites. Segregation studies and linkage analysis of these and previously published microsatellites were carried out in pedigrees consisting of diploid dams and haploid gynogenetic offspring. We confirm earlier reports that salmon microsatellites tend to have a higher number of repeat units than those of mammals. Linkage analysis revealed that three microsatellites belong to a linkage group spanning ≍ 50 cM of the genome, whereas the remaining 10 markers seem to be unlinked.

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References

  • Altman, D G. 1991. Practical Statistics for Medical Research, Chapman and Hall, London.

    Google Scholar 

  • Botstein, D, White, R L, Skolnick, M, and Davis, R W. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphism. Am J Hum Genet, 32, 314–331.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Brooker, A L, Cook, D, Bentzen, P, Wright, J M, and Doyle, R W. 1994. Organization of microsatellites differs between mammals and coldwater teleost fishes. Can J Fish Aquat Sci, 51, 1959–1966.

    Article  Google Scholar 

  • Davisson, M T, Wright, J E, and Atherton, L M. 1973. Cytogenetic analysis of pseudolinkage of LDH loci in the teleost genus Salvelinus. Genetics, 73, 645–658.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Estoup, A, Presa, P, Krieg, F, Vaiman, D, and Guyomard, R. 1993. (CT)n and (GT)n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Heredity, 71, 488–496.

    Article  CAS  PubMed  Google Scholar 

  • Franck, J P, Harris, A, Bentzen, P, Denovan-Wright, E M, and Wright, J. 1991. Organization and evolution of satellite, minisatellite and microsatellite DNAs in teleost fishes. Oxford Surv Eukaryotic Genes, 7, 51–82.

    CAS  Google Scholar 

  • Johnson, K R, Wright, J E, and May, A. 1987. Linkage relationships reflecting ancestral tetraploidy in salmonid fish. Genetics, 116, 579–591.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lander, E, Green, P, Abrahamson, J, Barlow, A, Daley, M, Lincoln, S, and Newburg, L. 1987. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1, 174–181.

    Article  CAS  PubMed  Google Scholar 

  • Lie, Ø, Slettan, A, Lingaas, F, Olsaker, I, Hordvik, I, and Refstie, T. 1994. Haploid gynogenesis: A powerful strategy for linkage analysis in fish. Anim Biotech, 5, 33–45.

    Article  CAS  Google Scholar 

  • May, B, and Johnson, K R. 1990. Composite linkage map of salmonid fishes (Salvelinus, Salmo, Onchorynchus). In: O'Brien, S. J. (ed.) Genetic Maps: Locus Maps of Complex Genomes. Book 4, Nonhuman Vertebrates, pp. 151–159. Cold Spring Harbor Laboratories, Cold Spring Harbor, NY.

    Google Scholar 

  • McConell, S, O'Reilly, P, Hamilton, L, Wright, J, and Bentzen, P. 1995. Polymorphic microsatellite loci from Atlantic salmon (Salmo salar): genetic differentiation of North American and European populations. Can J Fish Aqual Sci, 52, 1863–1872.

    Article  Google Scholar 

  • Ohno, S, Muramoto, J, Klein, J, and Atkin, N R. 1969. Diploid-tetraploid relationship in clupleoid and salmonid fish. In: Darlington, C. D. and Lewis, K. R. (eds) Chromosomes Today, vol. II, pp. 139–147. Oliver and Boyd, Edinburgh.

    Google Scholar 

  • Ostrander, E A, Jong, P M, Rine, J, and Duyk, G. 1992. Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences. Proc Natl Acad Sci USA, 89, 3419–3423.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Prodöhl, P A, Taggart, J B, and Ferguson, A. 1994. Single locus inheritance and joint segregation analysis of minisatellite (VNTR) DNA loci in brown trout (Salmo trutta L.). Heredity, 73, 556–566.

    Article  Google Scholar 

  • Refstie, T, Stoss, J, and Donaldson, E M. 1982. Production of all-female coho salmon (Oncotynchus kisutch) by diploid gynogenesis using irradiated sperm and cold shocks. Aquaculture, 29, 67–82.

    Article  Google Scholar 

  • Rubinsztein, D C, Amos, W, Leggo, J, Goodburn, S, Jain, S, Li, S H. et al. 1995. Microsatellite evolution — evidence for directionality and variation in rate between species. Nature Genetics, 10, 337–343.

    Article  CAS  PubMed  Google Scholar 

  • Slettan, A, Olsaker, I, and Lie, Ø. 1993. Isolation and characterization of variable (GT)n repetitive sequences from Atlantic salmon, Salmo salar L. Anim Genet, 24, 195–197.

    Article  CAS  Google Scholar 

  • Slettan, A, Olsaker, I, and Lie, Ø. 1995a. Atlantic salmon, Salmo salar, microsatellites at the SSOSL25, SSOSL85, SSOSL311, SSOSL417 loci. Anim Genet, 26, 281–282.

    Article  CAS  PubMed  Google Scholar 

  • Slettan, A, Olsaker, I, and Lie, Ø. 1995b. A polymorphic dinucleotide repeat microsatellite in Atlantic salmon, Salmo salar (SSOSL436). Genet, 26, 368.

    CAS  Google Scholar 

  • Slettan, A, Olsaker, I, and Lie, Ø. 1996. Polymorphic Atlantic salmon (Salmo salar L.) microsatellites at the SSOSL438, SSOSL439 and SSOSL444 loci. Anim Genet, 27, 57–58.

    Article  CAS  PubMed  Google Scholar 

  • Taggart, J B, and Ferguson, A. 1990a. Minisatellite DNA fingerprints of salmonid fishes. Anim Genet, 21, 377–389.

    Article  CAS  PubMed  Google Scholar 

  • Taggart, J B, and Ferguson, A. 1990b. Hypervariable minisatellite DNA single locus probes for the Atlantic salmon, Salmo salar L. J Fish Biol, 37, 991–993.

    Article  CAS  Google Scholar 

  • Taggart, J B, Prodöhl, P A, and Ferguson, A. 1995. Genetic markers for Atlantic salmon (Salmo salar L.): single locus inheritance and joint segregation analyses of minisatellitee (VNTR) DNA loci. Anim Genet, 26, 13–20.

    Article  CAS  Google Scholar 

  • Thorgaard, G H, Allendorf, F W, and Knudsen, K L. 1983. Gene-centromere mapping in rainbow trout: high interference over long map distances. Genetics, 103, 771–783.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Troyer, D L, Goad, D W, Xie, H, Rohrer, G A, Alexander, L J, and Beattie, C W. 1994. Use of direct in situ single-copy (DISC) PCR to physically map five porcine microsatellites. Cytogenet Cell Genet, 67, 199–204.

    Article  CAS  PubMed  Google Scholar 

  • Weber, J L. 1990. Informativeness of human (dC-dA)n-(dG-dT)n polymorphisms. Genomics, 7, 524–530.

    Article  CAS  PubMed  Google Scholar 

  • Wright, J E, Johnson, K, Hollister, A, and May, B. 1983. Meiotic models to explain classical linkage, pseudolinkage and chromosome pairing in tetraploid derivative salmonid genomes. In: Rattazzi, M. C., Scandalios, J. G. and Whitt, G. S. (eds) Isozymes: Current Topics in Biological and Medical Research, vol. 10, pp. 239–260. Alan R. Liss, New York.

    Google Scholar 

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Authors and Affiliations

  1. Department of Morphology, Genetics and Aquatic Biology, Norwegian College of Veterinary Medicine, PO Box 8146 Dep., Oslo, N-0033, Norway

    Audun Slettan, Ingrid Olsaker & Øystein Lie

Authors
  1. Audun Slettan
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  2. Ingrid Olsaker
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  3. Øystein Lie
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Correspondence to Audun Slettan.

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Slettan, A., Olsaker, I. & Lie, Ø. Segregation studies and linkage analysis of Atlantic salmon microsatellites using haploid genetics. Heredity 78, 620–627 (1997). https://doi.org/10.1038/hdy.1997.101

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  • Received: 21 August 1996

  • Issue date: 01 June 1997

  • DOI: https://doi.org/10.1038/hdy.1997.101

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Keywords

  • Atlantic salmon
  • genetic mapping
  • haploid gynogenesis
  • microsatellites
  • Salmo salar

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