Table 2 Pairwise population differentiation estimates of mtDNA Φ_ST for 14 red deer populations of Scottish Highland red deer (n=625)

Population	FL	CL	BA	AR	CO	MA	GC	GCR	GK	GST	CON	AG	SA
FL
CL	0.1107
BA	0.5276	0.2627
AR	0.4896	0.2371	0.0081
CO	0.5737	0.3062	0.0296	0.0696
MA	0.6629	0.4081	0.0750	0.1266	−0.0051
GC	0.5947	0.3157	0.1340	0.1725	0.0729	0.1470
GCR	0.7476	0.5234	0.4606	0.4579	0.4666	0.5057	0.4451
GK	0.5796	0.3449	0.1769	0.1751	0.1754	0.2331	0.2190	0.4916
GST	0.5866	0.3499	0.1417	0.1595	0.0953	0.1356	0.1399	0.4299	0.0202
CON	0.5997	0.4198	0.3192	0.3091	0.3345	0.3950	0.4006	0.5631	0.1459	0.1933
AG	0.5931	0.3723	0.2051	0.2111	0.1828	0.2400	0.2567	0.5096	0.0524	0.0498	0.0393
SA	0.3762	0.2391	0.2879	0.2842	0.3245	0.4090	0.3822	0.5322	0.38256	0.3815	0.4455	0.3982
K	0.3605	0.2146	0.2572	0.2528	0.2938	0.3793	0.3520	0.5128	0.3574	0.3545	0.4271	0.3739	−0.0112

Bold indicates population pairs that were not significantly differentiated after applying strict Bonferroni correction (critical P<0.000549).

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