Table 2 Comparison of breed allocations to groups using different methods

Breed	STRUCTURE	BAPS	STRUCTURAMA	DSA
Berkshire	A^a	A^a	A	A
British Lop	B^a	B^a	B	B^a
British Saddleback	C,D	A^a	C^a	C,D
Duroc	E	C	D	E
Gloucestershire Old Spots	A^a	D	C^a	F
Hampshire	F	E	E	G
British Landrace	B^a		F	B^a
Line 1		F
Line 2		F
Line 3		B^a
Large black	G	G	G	H
Large White	H	H	H	I
Line 1
Line 2
Line 3
Middle White	I	I^a	I	J
Pietrain	J	I^a	J	K
Tamworth	K	J	K	L
Meishan	L		L	M
Line 1		K
Line 2		L

Phenotypic breed related to the results of Bayesian genotypic clustering at K=12 (Figure 2) and phylogenetic reconstruction (DSA, Figure 4).
^aIndicates a group, which has more than one allocated breed.

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