Table 4 Neutrality test at each nuclear locus as measured by Tajima's D, Fu and Li's D^* and Fay and Wu's H.

Locus	P. slvestris var. mongolica			P. densiflora			P. funebris			P. takahasii
	D	D*	H	D	D*	H	D	D*	H	D	D*	H
a3ip2	0.4892	0.8907	−3.0154	NA	NA	NA	0.3046	−0.3973	0.8889	0.1350	0.8913	−1.5714
ccoaomt	−1.8493^*	−2.2413	−1.4892	−1.4089	−1.3125	−2.2530^*	−0.2238	0.1597	−1.7818	0.1728	0.1348	−0.6389
pod	0.8708	−0.1036	1.0145	−0.5533	−0.5293	−4.5735	1.6709	1.1179	1.5000	0.6816	0.8913	0.2143
c3h-1	−0.2331	−0.5206	0.4558	−1.2429	−0.4453	−2.0733	0.8317	0.5428	0.4546	1.3299	0.8209	0.9286
CesA2	−2.1312^*	−3.1453^**	−1.2667	0.1208	−0.5416	−0.1477	0.8233	0.2314	0.9455	0.7944	0.2314	−0.0833
dhn1	−0.2325	−0.7284	3.2213	−0.0336	−0.0672	7.3464	−1.0356	−1.0030	4.2381	0.2274	0.3269	2.1429
erd3	−0.0503	0.1405	−2.9930	−0.8440	−0.7560	−2.3020	0.1591	−0.4623	0.7091	0.2626	0.0638	1.0667
aqua-MIP	−0.4165	−1.1908	1.1923	−0.2909	0.1537	1.9368	−0.0452	0.5717	3.6727	−0.6265	−0.6392	2.5714

Significant level: ^*P<0.05. NA: failed to be computed for lack of enough variation. All indels were excluded from the analysis.

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