Figure 1
From: Controlling type 1 error rates in genome-wide association studies in plants
A comparison of three different approaches for performing genome-wide association mapping and adjusting for multiple testing. Circles (triangles) denote the –log adjusted P-values from a single-stage analysis with raw P-values adjusted with Mueller’s resampling approach verse the –log adjusted P-values from a single-stage analysis (weighted two-stage analysis) with raw P-values adjusted with my modified resampling approach. Symbols on the diagonal mean the two approaches are giving equivalent adjusted P-values. This figure shows that the three approaches give similar results despite there being orders of magnitude differences in computing times.
