Table 2 Overrepresented functional categories in the L♀R♂/R♀L♂ and L♀D♂/D♀L♂ comparisons (binomial test, significance threshold: P-value=0.05; http://www.pantherdb.org)

From: The influence of parental effects on transcriptomic landscape during early development in brook charr (Salvelinus fontinalis, Mitchill)

Comparison

Functional category

Number of UNIGENE

% OG

OG fold change

UG fold change

L♀R♂ vs R♀L♂

Cell cycle

8

87.0

0.30

−0.30

(346 significant unique genes)

Cell motility

7

100.0

0.30

 

Cell structure

9

100.0

0.31

 

Intracellular protein traffic

13

92.3

0.34

−0.49

 

Intracellular transport

13

61.5

0.35

−0.47

 

Nucleic acid metabolism

28

89.3

0.30

−0.30

 

Muscle contraction

5

40.0

0.25

−0.25

L♀D♂ vs D♀L♂

Lipid metabolism

5

40.0

0.48

−0.36

(102 significant unique genes)

Signal transduction

7

28.6

0.24

−0.32

  1. Abbreviations: D, domestic; L, laval; OG, overexpressed gene; UG, underexpressed gene; R, rupert.
  2. Fold changes are log transformed.