Table 1 Description of the simulated data

From: CLIP Test: a new fast, simple and powerful method to distinguish between linked or pleiotropic quantitative trait loci in linkage disequilibria analysis

Alternatives

Setups

 

Number of individuals genotyped, density of the SNP assay

 

1365 ind., 60 K; 2715 ind., 60 K; 1365 ind., 800 K; 2715 ind., 800 K

0.4

0.5

−0.7,−0.3, 0, 0.3 or 0.7

0.2

0.3

−0.7,−0.3, 0, 0.3 or 0.7

0.07 or 0.1

  1. Abbreviation: SNP, single nucleotide polymorphism.
  2. Data were simulated according to model (1). : residual variance for trait : residual correlation between trait 1 and 2, ratio of the genetic variance to the residual variance for trait : genetic correlation between trait 1 and 2, ratio of the quantitative trait loci variance to the residual variance for trait k.
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