Table 2 Mean power and alpha risk of the CLIP and CI tests depending on the setup

From: CLIP Test: a new fast, simple and powerful method to distinguish between linked or pleiotropic quantitative trait loci in linkage disequilibria analysis

Number of individuals

SNP density

Power

Alpha risk

  

CLIP

CI

CLIP

CI

1365

60 K

57 (23)

25 (24)

4 (138)

6 (84)

 

800 K

61 (27)

50 (16)

3 (157)

2 (105)

2715

60 K

75 (9)

34 (20)

4 (171)

6 (76)

 

800 K

80 (11)

65 (13)

4 (136)

2 (97)

  1. Abbreviations: CI, confidence interval; CLIP, close linkage versus pleiotropism; SNP, single nucleotide polymorphism.
  2. RSD in bracket: relative standard deviation (in percentage) calculated over the different alternatives within each setup.
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