Table 6 Comparison of the map distances on chromosome 3 from methods I, II and the new method in a rice data analysis
From: Linkage group correction using epistatic distorted markers in F2 and backcross populations
Marker | χ2 | Selection | Map distances (c M ) from various methods | Segregation distortion loci effect | ||||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | I | II | New | u | v | x |
RZ497 | 3.57 | No | — | — | — | — | — | — |
RZ25 | 10.89** | Gametic/zygotic (g/z) | 1.14 | 0.15 | 0.15 | 11.45 | 0.05 | 0.53 |
RZ22 | 11.56** | g/z | 0.00 | 0.00 | 0.00 | 0.71 | 0.71 | 0.50 |
RZ18 | 5.38* | g/z | 1.17 | 0.17 | 1.26 | 0.01 | 1.43 | 0.55 |
CDO375 | 0.29 | No | 0.00 | 0.00 | 0.00 | 0.84 | 0.84 | 0.71 |
RCH | 1.90 | No | 8.95 | 8.99 | 8.95 | 0.91 | 0.91 | 0.82 |
RZ696 | 1.08 | No | 9.76 | 9.81 | 9.76 | 0.73 | 0.97 | 0.69 |
RZ394 | 4.57* | g/z | 2.80 | 0.68 | 0.68 | 7.07 | 0.10 | 0.71 |
RZ452 | 3.85* | g/z | 0.00 | 0.00 | 0.00 | 0.80 | 0.80 | 0.65 |
RZ251 | 3.32 | No | 1.22 | 0.23 | 0.23 | 9.34 | 0.08 | 0.73 |
RZ585 | 8.89** | g/z | 2.80 | 0.49 | 0.49 | 8.58 | 0.06 | 0.49 |
RZ284 | 18.6** | g/z | 4.75 | 5.29 | 6.52 | 0.62 | 0.31 | 0.30 |
RZ672 | 12.49** | g/z | 3.07 | 3.48 | 4.70 | 0.44 | 0.43 | 0.36 |
CDO938 | 8.05** | g/z | 3.10 | 3.26 | 5.26 | 0.44 | 0.44 | 0.52 |
RG745 | 8.78** | g/z | 0.00 | 0.00 | 0.00 | 0.75 | 0.75 | 0.56 |
RZ574 | 6.37* | g/z | 0.00 | 0.00 | 0.00 | 0.79 | 0.79 | 0.63 |
RZ1000 | 12.52** | g/z | 1.65 | 0.28 | 2.44 | 1.04 | 0.01 | 0.56 |
CDO608 | 4.74* | g/z | 2.03 | 0.53 | 2.46 | 0.02 | 1.32 | 0.63 |
RG227 | 3.08 | No | 0.00 | 0.00 | 0.00 | 0.77 | 0.77 | 0.59 |
RZ678 | 11.12** | g/z | 0.00 | 0.00 | 0.00 | 0.85 | 0.85 | 0.72 |
BCD734 | 11.56** | g/z | 0.00 | 0.00 | 0.00 | 0.72 | 0.72 | 0.52 |
BCD1092 | 8.38** | g/z | 0.00 | 0.00 | 0.00 | 0.72 | 0.72 | 0.52 |
CD1053X | 13.79** | g/z | 0.00 | 0.00 | 0.00 | 0.73 | 0.73 | 0.53 |
RZ399 | 7.19** | g/z | 0.00 | 0.00 | 0.00 | 0.73 | 0.73 | 0.53 |
RZ517 | 12.3** | g/z | 0.00 | 0.00 | 0.00 | 0.74 | 0.74 | 0.55 |
RZ16 | 10.12** | g/z | 0.00 | 0.00 | 0.00 | 0.70 | 0.70 | 0.49 |
CDO260 | 16.64** | g/z | 0.00 | 0.00 | 0.00 | 0.69 | 0.69 | 0.48 |
CDO33X | 12.96** | g/z | 0.00 | 0.00 | 0.00 | 0.67 | 0.67 | 0.44 |
RG191 | 9.24** | g/z | 1.24 | 0.36 | 2.28 | 0.80 | 0.02 | 0.52 |
RG224 | 3.96* | g/z | 0.00 | 0.00 | 0.00 | 0.78 | 0.78 | 0.61 |
CD1387B | 12.96** | g/z | 0.00 | 0.00 | 0.00 | 0.85 | 0.85 | 0.72 |
CDO1395 | 13.5** | g/z | 0.00 | 0.00 | 0.00 | 0.68 | 0.68 | 0.46 |
RZ313 | 11.71** | g/z | 0.00 | 0.00 | 0.00 | 0.69 | 0.69 | 0.48 |
RG450 | 15.36** | g/z | 0.00 | 0.00 | 0.00 | 0.69 | 0.69 | 0.47 |
RG369A | 11.33** | g/z | 3.30 | 3.34 | 4.63 | 0.34 | 0.69 | 0.47 |
RG100 | 10.13** | g/z | 2.65 | 0.50 | 3.95 | 0.99 | 0.01 | 0.51 |
RZ545 | 4.76* | g/z | 0.00 | 0.00 | 0.00 | 0.72 | 0.72 | 0.51 |
RZ742B | 5.45* | g/z | 4.66 | 4.54 | 5.16 | 0.47 | 0.96 | 0.59 |
CDO1069 | 14.44** | g/z | 3.38 | 0.34 | 5.29 | 0.91 | 0.00 | 0.46 |
RZ993X | 12.63** | g/z | 2.29 | 2.49 | 3.52 | 0.46 | 0.45 | 0.43 |
RZ891 | 7.51** | g/z | 2.29 | 0.30 | 3.03 | 0.00 | 1.13 | 0.51 |
RZ987 | 5.76* | g/z | 2.52 | 0.45 | 3.10 | 1.30 | 0.01 | 0.62 |
RZ329 | 8.49** | g/z | 2.49 | 2.57 | 2.56 | 0.77 | 0.79 | 0.60 |
RG944 | 8.38** | g/z | 7.57 | 7.55 | 8.00 | 0.48 | 0.95 | 0.51 |
RG348 | 9.91** | g/z | 6.83 | 5.93 | 6.91 | 1.16 | 0.29 | 0.47 |
RG104 | 2.85 | No | 5.69 | 5.11 | 5.11 | 0.46 | 1.36 | 0.63 |
CDO20 | 14.82** | g/z | 7.64 | 6.92 | 6.92 | 1.31 | 0.44 | 0.58 |
CDO481 | 5.31* | g/z | 22.82 | 23.62 | 25.97 | 0.37 | 0.82 | 0.37 |
RG432 | 2.47 | No | 27.10 | 18.80 | 18.80 | 0.37 | 2.56 | 0.96 |
