Table 4 Nucleotide variation at the ITS1, ITS2 and 5.8S rDNA
Groups of sequences | Length (bp) | Number of different haplotypes | Variable sites | η (no. of mutations) | π±s.e. (nucleotide diversity per site) | Average number of nucleotide differences (k) |
|---|---|---|---|---|---|---|
ITS1 | ||||||
Genomic (0B) | 337 | 8 | 14 | 14 | 0.0119±0.0007 | 4.0 |
Genomic (+B) | 361 | 10 | 13 | 13 | 0.0130±0.0005 | 4.7 |
M8 chromosome | 346 | 5 | 4 | 4 | 0.0033±0.0003 | 1.1 |
S9 chromosome | 347 | 5 | 7 | 7 | 0.0075±0.0007 | 2.6 |
S10 chromosome | 347 | 4 | 3 | 3 | 0.0035±0.0004 | 1.2 |
S11 chromosome | 379 | 4 | 5 | 5 | 0.0044±0.0006 | 1.7 |
X chromosome | 364 | 6 | 9 | 9 | 0.0045±0.0004 | 1.6 |
B24 chromosome | 361 | 14 | 22 | 22 | 0.0077±0.0006 | 2.8 |
Overall | 329 | 43 | 44 | 46 | 0.0156±0.0001 | 5.1 |
ITS2 | ||||||
Genomic (0B) | 178 | 5 | 5 | 5 | 0.0111±0.0006 | 2.0 |
Genomic (+B) | 178 | 5 | 5 | 5 | 0.0094±0.0004 | 1.6 |
M8 chromosome | 178 | 3 | 3 | 3 | 0.0048±0.0009 | 1.2 |
S9 chromosome | 178 | 6 | 5 | 5 | 0.0105±0.0008 | 1.9 |
S10 chromosome | 178 | 4 | 3 | 3 | 0.0067±0.0008 | 1.2 |
S11 chromosome | 168 | 4 | 3 | 3 | 0.0060±0.0007 | 1.3 |
X chromosome | 178 | 5 | 5 | 5 | 0.0051±0.0006 | 0.9 |
B24 chromosome | 175 | 10 | 13 | 13 | 0.0087±0.0005 | 1.5 |
Overall | 165 | 28 | 30 | 31 | 0.0111±0.0001 | 1.8 |
5.8S rDNA | ||||||
Genomic (0B) | 158 | 5 | 5 | 5 | 0.0063±0.0007 | 1.0 |
Genomic (+B) | 158 | 5 | 4 | 4 | 0.0039±0.0004 | 0.6 |
M8 chromosome | 157 | 5 | 4 | 4 | 0.0073±0.0007 | 1.1 |
S9 chromosome | 158 | 1 | 0 | 0 | 0±0 | 0 |
S10 chromosome | 158 | 2 | 1 | 1 | 0.0025±0.0007 | 0.4 |
S11 chromosome | 158 | 2 | 1 | 1 | 0.00211±0.0006 | 0.3 |
X chromosome | 158 | 3 | 3 | 3 | 0.0035±0.0006 | 0.5 |
B24 chromosome | 157 | 8 | 9 | 10 | 0.0075±0.0006 | 1.2 |
Overall | 156 | 23 | 26 | 27 | 0.0047±0.0001 | 0.7 |
