Figure 1

Comparison of locus detection for Stacks (a–f) and PyRAD (g–l). The number of loci, SNPs and indels detected for specimens separated by 0–16 mutations at the mitochondrial mtMutS gene are shown for the different read coverage (m parameter) and divergence levels (M and n parameters, see text). In PyRAD analyses, ‘s’ corresponds to the ‘Wclust’ parameter. A full color version of this figure is available at the Heredity journal online.