Table 2 Results of the BLASTN alignments performed between Stacks and PyRAD sequences
Specimen | Haplotype | Read category | No. of reads (M) | 89% Divergence | 93% Divergence | ||||
|---|---|---|---|---|---|---|---|---|---|
No. of loci (PyRAD) | No. of loci (Stacks) | Intersect (%) | No. of loci (PyRAD) | No. of loci (Stacks) | Intersect (%) | ||||
TER2044 | 11 | High | 5.82 | 6580 | 866 | 7.84 | 6720 | 607 | 5.54 |
JAC1018 | J | High | 5.49 | 3305 | 1851 | 24.57 | 2717 | 1202 | 21.46 |
TER7092 | 7 | High | 4.04 | 6867 | 1363 | 13.03 | 6862 | 1246 | 11.40 |
TER130424 | 9 | Median | 1.61 | 6151 | 1198 | 12.73 | 6323 | 850 | 8.86 |
TER13064 | 8 | Median | 1.61 | 6876 | 4183 | 39.89 | 6584 | 4607 | 42.72 |
TER13087 | 9 | Median | 1.60 | 5959 | 1131 | 13.81 | 6189 | 821 | 9.26 |
TER11101 | 4 | Low | 0.09 | 1046 | 228 | 1.15 | 944 | 138 | 0.64 |
TER13047 | 9 | Low | 0.08 | 1145 | 396 | 9.96 | 1107 | 297 | 8.67 |
TER11108 | 4 | Low | 0.04 | 441 | 50 | 2.49 | 384 | 32 | 1.04 |
