Table 2 Genetic diversity indices for Scyliorhinus canicula sample collections inferred from the COI fragment (mtDNA) and 12 nuclear microsatellite loci (nDNA) (Scan02, Scan03, Scan04, Scan06, Scan09, Scan10, Scan11, Scan12, Scan13, Scan14, Scan15 and Scan16, all described in Griffiths et al., 2011b)

From: Strong population genetic structure and contrasting demographic histories for the small-spotted catshark (Scyliorhinus canicula) in the Mediterranean Sea

Sample collection

mtDNA

nDNA

 

N

Hap

h

π

k

N

A

A R

H O

H E

ATL

17

8 (2)

0.816

0.0028

1.63

—

—

—

—

—

BAL

51

10 (7)

0.742

0.0021

1.25

128

6.67 (3)

4.87

0.57

0.60

ALG

50

12 (5)

0.826

0.0030

1.75

65

7.25 (3)

5.63

0.64

0.67

ION

46

10 (6)

0.753

0.0031

1.83

82

6.67 (4)

5.15

0.55

0.60

COR

12

3 (0)

0.439

0.0011

0.64

18

4.67 (0)

4.62

0.57

0.57

CRE

51

4 (0)

0.664

0.0021

1.26

103

7.33 (3)

5.04

0.54

0.57

MYR

—

—

—

—

—

58

6.42 (1)

5.00

0.57

0.57

SAR

14

4 (0)

0.670

0.0020

1.20

62

6.42 (1)

4.99

0.58

0.58

CYC

46

4 (0)

0.680

0.0023

1.34

76

6.58 (0)

5.12

0.55

0.59

nAEG

93

5 (1)

0.667

0.0022

1.31

203

7.25 (6)

5.11

0.58

0.60

nEVO

29

4 (0)

0.638

0.0021

1.27

39

6.42 (0)

5.22

0.58

0.59

LEV

22

10 (4)

0.900

0.0043

2.52

—

—

—

—

—

Overall

431

37 (25)

0.808

0.0032

1.91

834

10.3 (21)

5.30

0.57

0.59

  1. Abbreviations: A, mean number of alleles (unique alleles); AR, mean allelic richness; COI, cytochrome c oxidase subunit I; N, number of individuals; h, haplotype diversity; Hap, number of haplotypes (unique haplotypes); HE, mean expected heterozygosity; HO, mean observed heterozygosity; k, mean number of nucleotide differences between haplotypes; mtDNA, mitochondrial DNA; nDNA, nuclear DNA; π, nucleotide diversity.
  2. The sample collection codes are explained in Table 1.
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