Table 1 Grapevine WRKY genes identified in the PN40024

From: Genome and transcriptome analysis of the grapevine (Vitis vinifera L.) WRKY gene family

Proposed name

PN40024 12× V1 ID

Chr

ORF (aa)

MW (kDa)

pI

Ai

GRAVY

Group

Conserved motif

Domain pattern

Zinc finger

VvWRKY01

VIT_01s0011g00720

1

305

33.3585

5.62

47.67

−0.882

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY02

VIT_01s0026g01730

1

594

64.3392

6.02

57.24

−0.689

IIb

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY03

VIT_01s0010g03930

1

189

21.2588

9.13

54.13

−0.723

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY04

VIT_02s0025g00420

2

329

36.3666

5.71

60.52

−0.602

IIe

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY05

VIT_02s0025g01280

2

342

38.5618

6.05

55.03

−0.793

III

WRKYGQK

C–X7–C–X23–H–X–H

C2HC

VvWRKY06

VIT_04s0008g01470

4

166

18.9167

5.2

48.19

−1.122

IIc

WRKYGKK

C–X4–C–X23–H–X–H

C2H2

VvWRKY07

VIT_04s0008g05750

4

261

28.8756

9.1

65.4

−0.716

IIa

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY08

VIT_04s0008g05760

4

317

35.2637

8.22

73.19

−0.718

IIa

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY09

VIT_04s0008g06600

4

491

54.3129

8.88

57.8

−0.837

I

2×[WRKYGQK]

C–X4–C–X23–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY10

VIT_04s0069g00920

4

338

36.5692

9.49

63.20

−0.501

IId

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY11

VIT_04s0069g00970

4

156

17.4673

5.92

55.58

−0.75

IIc

WRKYGKK

C–X4–C–X23–H–X–H

C2H2

VvWRKY12

VIT_04s0069g00980

4

101

12.0977

9.8

54.95

−1.067

IIc

WRKYGKK

C–X4–C–X23–H–X–H

C2H2

VvWRKY13

VIT_04s0023g00470

4

502

54.8737

7.07

57.71

−0.806

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY14

VIT_05s0077g00730

5

309

34.4082

5.72

54.05

−0.825

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY15

VIT_06s0004g00230

6

129

14.989

8.89

67.36

−0.512

NG

WKKYGQK

C–X4–C–X23H–X–H

C2H2

VvWRKY16

VIT_06s0004g07500

6

603

66.2845

6.42

47.06

−0.915

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY17

VIT_07s0141g00680

7

340

38.0411

9.84

64.24

−0.826

IId

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY18

VIT_07s0005g01520

7

242

27.5485

5.86

50.7

−0.933

IIe

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY19

VIT_07s0005g01710

7

302

33.7616

6.74

54.9

−0.831

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY20

VIT_07s0005g02570

7

506

54.6601

8.03

58.32

−0.646

IIb

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY21

VIT_07s0031g00080

7

336

36.6164

9.57

63.54

−0.624

IId

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY22

VIT_07s0031g01710

7

180

19.8731

6.3

54.17

−0.652

IIc

WRKYGKK

C–X4–C–X23–H–X–H

C2H2

VvWRKY23

VIT_07s0031g01840

7

226

25.7181

9.08

65.18

−0.681

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY24

VIT_08s0058g00690

8

552

61.0009

7.29

44.71

−0.895

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY25

VIT_08s0058g01390

8

357

40.4237

5.73

62.55

−0.797

III

WRKYGQK

C–X7–C–X23–H–X–H

C2HC

VvWRKY26

VIT_08s0040g03070

8

477

52.3037

8.84

52.91

52.91

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY27

VIT_08s0007g00570

8

299

33.1578

5.19

61.34

−0.752

NG

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY28

VIT_09s0018g00240

9

311

34.3754

8.71

65.85

−0.764

IIa

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY29

VIT_10s0116g01200

10

535

57.4599

6.04

64.67

−0.57

IIb

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY30

VIT_10s0003g01600

10

278

30.9392

5.14

42.81

−0.845

IIe

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY31

VIT_10s0003g02810

10

319

35.0008

6.76

50.78

−0.782

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY32

VIT_10s0003g05740

10

312

33.8314

7.56

51.67

−0.821

IIe

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY33

VIT_11s0037g00150

11

450

53.8146

6.12

55.91

−0.822

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY34

VIT_11s0052g00450

11

245

26.7143

9.91

68.49

−0.586

IId

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY35

VIT_12s0028g00270

12

311

34.7884

6.92

42.67

−0.949

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY36

XP_002277383.1

12

244

26.3864

5.41

62.79

−0.517

IIe

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY37

VIT_12s0059g00880

12

593

64.1152

6.48

60.46

−0.665

IIb

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY38

VIT_12s0057g00550

12

403

44.3906

5.02

63.33

−0.917

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY39

VIT_12s0055g00340

12

487

53.6434

5.21

63.92

−0.823

IIb

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY40

VIT_13s0067g03130

13

364

40.288

5.97

55.8

−0.729

III

WRKYGQK

C–X7–C–X23–H–X–H

C2HC

VvWRKY41

VIT_13s0067g03140

13

313

35.3091

5.45

60.1

−0.738

III

WRKYGQK

C–X7–C–X23–H–X–H

C2HC

VvWRKY42

VIT_14s0081g00560

14

362

41.2639

9.68

64.59

−0.801

IId

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY43

VIT_14s0068g01770

14

182

20.7873

9.41

52.42

−0.884

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY44

VIT_14s0108g00120

14

502

53.9169

6.48

64.36

−0.582

IIb

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY45

VIT_14s0108g01280

14

527

57.4979

8.12

59.41

−0.788

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY46

VIT_15s0021g01310

15

202

22.8743

9.13

49.16

−1

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY47

VIT_15s0046g01140

15

323

36.1682

5.14

58.24

−0.622

III

WRKYGQK

C–X7–C–X23–H–X–H

C2HC

VvWRKY48

VIT_15s0046g02150

15

201

22.6178

9.28

72.29

−0.624

IIc

WRKYGQK

C–X4–C–X23–H–X–H

C2H2

VvWRKY49

VIT_15s0046g02190

15

348

37.99

5.73

55.32

−0.633

IIe

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY50

VIT_16s0050g01480

16

182

20.5055

5.28

48.9

−1.057

IIe

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY51

VIT_16s0050g02510

16

364

40.0434

5.45

57.66

−0.704

III

WRKYGQK

C–X7–C–X23–H–X–H

C2HC

VvWRKY52

VIT_17s0000g01280

17

151

17.7131

9.67

49.07

−1.043

IIc

WRKYGQK

C–X4–C-X23–H–X–H

C2H2

VvWRKY53

VIT_17s0000g05810

17

605

65.1789

7.55

52.66

−0.746

IIb

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY54

VIT_18s0001g10030

18

319

34.7564

9.16

67.55

−0.502

IId

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY55

VIT_19s0090g00840

19

551

59.2499

9.24

57.75

−0.646

IIb

WRKYGQK

C–X5–C–X23–H–X–H

C2H2

VvWRKY56

VIT_19s0090g01720

19

590

64.3486

6.27

65.88

−0.658

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY57

VIT_19s0015g01870

19

573

62.016

5.04

59.76

−0.709

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

VvWRKY58

VIT_01s0011g00220

RND

502

54.6082

7.66

51.53

−0.846

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

VvWRKY59

VIT_00s0463g00010

UN

612

66.5023

6.1

65.15

−0.72

I

2×[WRKYGQK]

C–X4–C–X22–H–X–H(N)

C2H2

C–X4–C–X23–H–X–H(C)

  1. Abbreviations: Ai, aliphatic index; Chr, chromosome numbers; GRAVY, grand average of hydropathicity; MW, molecular weight; NG, no chromosomal group identified; ORF, open reading frame; pI, isoelectric point; RDM, random chromosome; UN, unknown chromosome.
  2. The variants of the conserved WRKYGQK peptide are shown in bold.