Table 5 Percentages of SVs and other types of variants on different chromosomes of ‘Indo’ and ‘Su Shuai’
Chr | SVa | INSb (%) | DELc (%) | IDEd (%) | INVe (%) | ITXf (%) | CTXg (%) | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Genotype | ‘Indo’ | ‘Su Shuai’ | ‘Indo’ | ‘Su Shuai’ | ‘Indo’ | ‘Su Shuai’ | ‘Indo’ | ‘Su Shuai’ | ‘Indo’ | ‘Su Shuai’ | ‘Indo’ | ‘Su Shuai’ | ‘Indo’ | ‘Su Shuai’ |
chr1 | 2953 | 2424 | 38.74% | 37.25% | 56.52% | 56.68% | 0.58% | 0.66% | 0.10% | 0.17% | 0.24% | 0.21% | 3.83% | 5.03% |
chr2 | 4377 | 3859 | 38.79% | 37.37% | 56.93% | 57.94% | 0.87% | 0.86% | 0.05% | 0.03% | 0.25% | 0.26% | 3.11% | 3.55% |
chr3 | 4137 | 3466 | 36.28% | 36.01% | 59.92% | 60.39% | 0.80% | 0.46% | 0.05% | 0.12% | 0.48% | 0.63% | 2.47% | 2.39% |
chr4 | 2566 | 2120 | 35.66% | 34.72% | 60.76% | 60.99% | 0.78% | 0.85% | 0.04% | 0.09% | 0.31% | 0.38% | 2.46% | 2.97% |
chr5 | 3541 | 2786 | 39.14% | 36.90% | 58.40% | 60.12% | 0.51% | 0.57% | 0.08% | 0.04% | 0.37% | 0.39% | 1.50% | 1.97% |
chr6 | 3047 | 2273 | 39.65% | 39.64% | 57.93% | 57.28% | 0.62% | 0.53% | 0.03% | 0% | 0.30% | 0.53% | 1.48% | 2.02% |
chr7 | 2142 | 1869 | 37.77% | 36.49% | 60.13% | 60.73% | 0.61% | 1.18% | 0.14% | 0.11% | 0.33% | 0.48% | 1.03% | 1.02% |
chr8 | 3183 | 2678 | 39.02% | 39.10% | 59.41% | 59.41% | 0.69% | 0.56% | 0.09% | 0.19% | 0.31% | 0.30% | 0.47% | 0.45% |
chr9 | 3580 | 2991 | 38.94% | 37.95% | 59.72% | 60.75% | 0.78% | 0.74% | 0.11% | 0.07% | 0.45% | 0.50% | 0% | 0% |
chr10 | 3999 | 3130 | 37.78% | 35.34% | 53.96% | 55.75% | 0.80% | 0.64% | 0.03% | 0.10% | 0.50% | 0.58% | 6.93% | 7.60% |
chr11 | 4538 | 3658 | 37.95% | 34.80% | 55.16% | 56.64% | 0.71% | 0.71% | 0% | 0.05% | 0.48% | 0.52% | 5.71% | 7.27% |
chr12 | 3902 | 3337 | 37.93% | 34.61% | 55.28% | 57.96% | 0.67% | 0.69% | 0.05% | 0.12% | 0.54% | 0.51% | 5.54% | 6.11% |
chr13 | 3738 | 3231 | 36.78% | 35.59% | 56.15% | 56.82% | 0.72% | 0.56% | 0.05% | 0.03% | 0.32% | 0.37% | 5.97% | 6.62% |
chr14 | 3296 | 2732 | 38.08% | 37.04% | 55.07% | 54.58% | 0.91% | 0.73% | 0.06% | 0.07% | 0.33% | 0.51% | 5.55% | 7.06% |
chr15 | 4928 | 4694 | 37.16% | 35.60% | 55.42% | 57.61% | 0.75% | 0.49% | 0.06% | 0.09% | 0.39% | 0.23% | 6.23% | 5.99% |
chr16 | 2601 | 2278 | 37.83% | 38.37% | 57.40% | 56.76% | 0.65% | 0.61% | 0.04% | 0% | 0.46% | 0.35% | 3.61% | 3.91% |
chr17 | 3019 | 2617 | 37.23% | 34.58% | 57.44% | 59.46% | 0.50% | 0.34% | 0.07% | 0.04% | 0.46% | 0.46% | 4.31% | 5.12% |
Total | 59 547 | 50 143 | 37.92% | 36.43% | 57.16% | 58.13% | 0.71% | 0.64% | 0.06% | 0.08% | 0.39% | 0.42% | 3.76% | 4.30% |
