Table 7 Candidate genes associated with disease resistance

From: Genomic variants of genes associated with three horticultural traits in apple revealed by genome re-sequencing

Gene IDa

Gene name

Protein name

Typeb/‘Indo’

Type/‘Su Shuai’

MDP0000272916

N

TMV resistance protein

Sc/NSd

S/NS/Sve

MDP0000495801

S/NS

S/NS/Sv

MDP0000749757

S/NS

S/NS/Sv

MDP0000743705

S/NS

S/NS/Sv

MDP0000233155

MbR7

TIR-NBS-LRR type R protein 7

S/NS

S/NS/Sv/Ff

MDP0000213823

RLP12

LRR receptor-like protein 12

S/NS

S/NS/Sv/F

MDP0000647479

S/NS

S/NS/Sv

MDP0000815929

At1g07650

Probable leucine-rich repeat (LRR) receptor-like serine/threonine-protein kinase

S/NS

S/NS/Sv/F

MDP0000233173

S/NS

S/NS/Sv

MDP0000232699

S/NS

S/NS/Sv

MDP0000262388

At3g47570

LRR receptor-like serine/threonine-protein kinase

S/NS

S/NS/Sv/F

MDP0000282367

S/NS

S/NS/Sv/F

MDP0000473154

S/NS

S/NS/Sv/F

MDP0000292097

At1g53440

Probable LRR receptor-like serine/threonine-protein kinase

S/NS

S/NS/Sv/F

MDP0000224930

At1g56140

Probable LRR receptor-like serine/threonine-protein kinase

S/NS

Sv/F

MDP0000165239

CLV1

LRR protein receptor protein kinase

S/NS

S/NS/Sv/F

MDP0000300234

SOBIR1

LRR receptor-like serine/threonine/tyrosine-protein kinase

S/NS

S/NS/Sv/F

  1. aGene ID, gene locus corresponds to gene ID in apple genome.
  2. bType of mutation in genotypes.
  3. cThere are single nucleotide polymorphism in genes.
  4. dThere are non-synonymous mutations in genes.
  5. eThere are structural variants in genes.
  6. fThere are frameshift mutations in genes.