Table 2 The flanking sequences and SNPs of the 25 polymorphic markers.

From: Developing single nucleotide polymorphism (SNP) markers from transcriptome sequences for identification of longan (Dimocarpus longan) germplasm

No.

SNP ID

Species

Flanking sequences and SNPs

1

Dl 475

Longan

ATAATGGTCTTCGCAAGGGAGTTATATTATTCCTATCAATATGTGCATC[C/G]TTTGAGTTCCTATGTTTTCTGCTGTATGCATTTTTCTTCCCTAAACTGCCA

2

Dl 477

Longan

GGGGAGGGAAACTGGAAGGCTGTGGTAATTGGCATTTCTGTTGCTGTTA[C/T]TGTGGTAGGATTATGTCTCATAATTTTGATCTTGGGTATCCTCTACTGGAG

3

Dl 479

Longan

CTGTCCACCACATGTACTACATGTAGATGGTTTTGTCCCTGGTTTTGCA[C/G]CTGAACCATTGCAAGTCCCACAGCTTTCAAGACGTGTTATCTCAATCTCTT

4

Dl 480

Longan

TACTTCCTGAATTAGAAACAGGACTACATGATGTGGAAGAGTGGAAAAC[T/C]AGTTGCAATTCACTTTAACATGCTGGCTATTAAATTTCAAAATTTGGTGAG

5

Dl 483

Longan

TGACTTTCATTGTTACACTTCGCTAATTGTCTCCAATGACAGTGACAAA[T/G]AGATCACCAGGGAATCCCTGTGGAAATTAGAGAATTATTATCATTTAGTAT

6

Dl 486

Longan

CAGTGACAAAGAGATCACCAGGGAATCCCTGTGGAAATTAGAGAATTAT[G/T]ATCATTTAGTATTGTTTTTGTCCAACTTCTTAATCCTACTGTCAACTGCAT

7

Dl 488

Longan

TTAACATGCTGGCTATTAAATTTCAAAATTTGGTGAGTAGTATGATGTG[T/G]GATTCTAAAATTGATGAAATCTTTTATTGAAAAGGTGGCTTTAGGGTAACA

8

Dl 489

Longan

TATCAAAACACAGCCCGTGCTGTGGAGAAGCTTACAATGGACGAGCTGC[C/T]AGCCTCTATGCTGGCGCTCCTTGCTATGAAGACTTTCGATGAGCAATGCAA

9

Dl 494

Longan

TTTAAGCTGTATATATGAATTAAAAAAATAAGAGCAATTTCCGCAGGTT[T/G]TTACATTTGCCAACCATACCAAGAAATTTTATGTTTAAAAAGTAAAGAAAG

10

Dl 496

Longan

CCCACATCGTGTTCAACAATCTAGGTTGCCTTGTGTTTGTGGTGGTACA[G/A]ATGGGTGGTCTCCATCTCCATTTTTGTTGGATTTTTGTGGTTGTAGGGTGT

11

Dl 499

Longan

TTAACATGCTGGCTATTAAATTTCAAAATTTGGTGAGTAGTATGATGTG[G/T]GATTCTAAAATTGATGAAATCTTTTATTGAAAAGGTGGCTTTAGGGTAACA

12

Dl 503

Longan

AAAAAAATAAGAGCAATTTCCGCAGGTTGTTACATTTGCCAACCATACC[C/A]AGAAATTTTATGTTTAAAAAGTAAAGAAAGAAAATAACAAGAAGCATGTTT

13

Dl 504

Longan

GCAACCAGTCTCTCCTGAGATGGTTATCTTTTACATAACTCAGGACACT[T/C]AGAGACATCCATTACTTCCTGAATTAGAAACAGGACTACATGATGTGGAAG

14

Dl 505

Longan

TCAGCGTTTGCTTGATGTAACTGAGGCTGTTGTTACGAATTCTGAACCG[G/C]AGAAGAGTTCCCCAGTTAAAGCCTCCAAGAAAGTGGAGCGCAACTATTCAG

15

Dl 507

Longan

CCAGTGTGAAGTGATTCAGCGTTTGCTTGATGTAACTGAGGCTGTTGTT[A/G]CGAATTCTGAACCGGAGAAGAGTTCCCCAGTTAAAGCCTCCAAGAAAGTGG

16

Dl 508

Longan

CTTTTGTGGTATTGTCCACTGTGTGTAACAAGTTCGGTTAGTCGGATTT[C/T]GAATATGTAAATGAAGAATTAATACAGGAGGTGCTTGTATATAAATTGATA

17

Dl 509

Longan

AATGTGGTCTTTAAGTGGAGAAGATTTTTACTTCATGTGCATGGAGATA[T/C]TCTACAGAGGTGGAACCAGAAACGAGCAAGTAAGTGCGCCTGGTATTCTTC

18

Dl 511

Longan

AGGGAAATCATCTTGTAAGTGATGGAGAATTTTAGGCTTGGAATGATGC[G/A]TGCGAAGCAACATATCGACAGTATTGGGCATTGGTTATTGGCTCTCCCAAG

19

Dl 515

Longan

AGGTTGTTACATTTGCCAACCATACCAAGAAATTTTATGTTTAAAAAGT[T/A]AAGAAAGAAAATAACAAGAAGCATGTTTTTTCCTTCATTGGCGACCAGTTT

20

Dl 517

Longan

CTGATAAAGCTGGTCTCCCTAAGCAACCAGTCTCTCCTGAGATGGTTAT[T/C]TTTTACATAACTCAGGACACTTAGAGACATCCATTACTTCCTGAATTAGAA

21

Dl 518

Longan

AGGGGTTACAGTGACCTCCATTTCGTTACCTTGAGTATGCTGCTGACCA[C/G]TTGGTGGTTGCTCTGCATTCCCCATTAAATTCCATTTCTGCCCGCCCTGAT

22

Dl 520

Longan

TACTTCCTGAATTAGAAACAGGACTACATGATGTGGAAGAGTGGAAAAC[C/T]AGTTGCAATTCACTTTAACATGCTGGCTATTAAATTTCAAAATTTGGTGAG

23

Dl 544

Longan & Lychee

GCAACCAGTCTCTCCTGAGATGGTTATCTTTTACATAACTCAGGACACT[C/T]AGAGACATCCATTACTTCCTGAATTAGAAACAGGACTACATGATGTGGAAG

24

Dl 554

Longan & Lychee

CCTACATCGCCGGGTTGCTGACCGGCAGGCCGAATTCGAAGGCTACTGG[A/G]CCTAATGGAGAGACCCTTGATGCTAAAGAAGCCAGTCGAAGGGCTGGTTTT

25

Dl 556

Longan & Lychee

TGCAGCCTAAAGAAGGGCTTGCTCTAGTGAATGGGACAGCTGTGGGTTC[T/C]GGCTTGGCTTCTATGGTTCTTTTCGAGGCCAACATTCTTGCTGTGTTATCT