Table 3 Minor allele frequency, information index, heterozygosity and inbreeding coefficient of the 25 SNP loci scored on 50 longan accessions.

From: Developing single nucleotide polymorphism (SNP) markers from transcriptome sequences for identification of longan (Dimocarpus longan) germplasm

SNP ID

Minor allele frequency

Information index

Observed heterozygosity

Expected heterozygosity

Inbreeding coefficient

Dl 475

0.396

0.671

0.375

0.478

0.216

Dl 477

0.410

0.677

0.100

0.484

0.793

Dl 479

0.357

0.652

0.714

0.459

−0.556

Dl 480

0.344

0.644

0.200

0.452

0.557

Dl 483

0.420

0.680

0.840

0.487

−0.724

Dl 486

0.290

0.602

0.340

0.412

0.174

Dl 488

0.418

0.680

0.388

0.487

0.203

Dl 489

0.194

0.492

0.102

0.313

0.674

Dl 494

0.216

0.522

0.250

0.339

0.262

Dl 496

0.458

0.690

0.875

0.497

−0.762

Dl 499

0.220

0.527

0.400

0.343

−0.166

Dl 503

0.061

0.230

0.122

0.115

−0.065

Dl 504

0.220

0.527

0.400

0.343

−0.166

Dl 505

0.438

0.685

0.875

0.492

−0.778

Dl 507

0.380

0.664

0.240

0.471

0.491

Dl 508

0.420

0.680

0.680

0.487

−0.396

Dl 509

0.316

0.624

0.633

0.433

−0.463

Dl 511

0.410

0.677

0.260

0.484

0.463

Dl 515

0.330

0.634

0.620

0.442

−0.402

Dl 517

0.120

0.367

0.240

0.211

−0.136

Dl 518

0.250

0.562

0.500

0.375

−0.333

Dl 520

0.280

0.593

0.560

0.403

−0.389

Dl 544

0.120

0.367

0.240

0.211

−0.136

Dl 554

0.410

0.677

0.100

0.484

0.793

Dl 556

0.190

0.486

0.100

0.308

0.675

Mean

0.307

0.584

0.406

0.400

−0.007