Table 1 Summary of analyses and alfa diversity results of metagenomic surveys conducted with conventional and organic apples, soon after fruit purchasing (T1) and after 2 weeks of storage (T5), and with different fruit parts including stem end (SE), calyx end (CE), wounded flesh (WF), and peel (PE)
Total reads | Total OTUs | OTUs 700 a | Shannon | Chao1 | |
|---|---|---|---|---|---|
Conventional | |||||
T1 | |||||
SE | 194159 | 364 | 34.6 | 3.166448 | 75.83333 |
CE | 125725 | 298 | 22.9 | 1.934228 | 50.07833 |
WF | 10372 | 78 | 37.8 | 2.510214 | 43.90085 |
PE | 129369 | 332 | 95.3 | 4.784009 | 139.6858 |
T5 | |||||
SE | 84698 | 192 | 29.4 | 2.682104 | 63.12667 |
CE | 116059 | 289 | 15.6 | 1.591507 | 21.25000 |
WF | 53464 | 138 | 42.4 | 2.740644 | 65.18015 |
PE | 80009 | 183 | 77 | 4.568145 | 101.1823 |
Organic | |||||
T1 | |||||
SE | 111066 | 275 | 40.5 | 2.993430 | 66.99952 |
CE | 79089 | 162 | 23.5 | 1.498342 | 33.40952 |
WF | 30538 | 135 | 67.3 | 4.957833 | 76.63969 |
PE | 65419 | 143 | 56 | 4.051488 | 75.27202 |
T5 | |||||
SE | 96374 | 205 | 46.5 | 3.757823 | 78.33488 |
CE | 401759 | 441 | 24.4 | 2.724301 | 39.44333 |
WF | 160605 | 346 | 24.6 | 2.437313 | 36.17345 |
PE | 97221 | 237 | 51.4 | 3.337052 | 77.45083 |
