Table 3 Summary of the number of available, validated and mapped SNPs markers

From: A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species

Source

Available on the 20 K array

Validated SNPs

iGL mapped SNPs

FB

14 628

12 508

12 349

Customized markers

103

60

53

IRSC–RosBREED

2750

2601

2481

IRSC–GDsnp

538

528

520

Multi-locus SNPs replicates

 

115

14

Total

18 019

15 812

15 417

  1. Abbreviations: FB, FruitBreedomics, designed in the 20 K Infinium SNP array development;22 IRSC, RosBREED and GDsnp markers, from the previously developed International Rosaceae SNP Consortium (IRSC) 8 K Infinium SNP array by Chagnè et al.;37 SNP, single-nucleotide polymorphism.
  2. Starting from the available markers as present on the 20 K Infinium SNP array,22 the number of validated SNPs (as the number of markers that mapped in at least one of the 21 individual families) and the number of SNP markers successful mapped on the integrated Genetic Linkage Map (iGL-mapped SNPs) are reported for each source type. Due to the presence of 111 multi-locus SNPs, the total count of validated and mapped SNPs includes multi-locus SNPs replicates as shown in the table.
Back to article page