Table 4 B. cenocepacia lxa locus and other genes upregulated under low oxygen concentration growth conditions
Gene ID | Annotation | Fold change |
---|---|---|
Stress response | ||
BCAL1648 | Universal stress protein | 3.5 |
BCAL2119 | Universal stress protein | 3.0 |
BCAM0050 | Universal stress protein | 16 |
BCAM0276a | Universal stress protein | 59 |
BCAM0278a | Small heat shock/α-crystallin protein | 240 |
BCAM0280a | Phospholipid-binding protein | 221 |
BCAM0290a | Universal stress protein | 105 |
BCAM0291a | Universal stress protein | 165 |
BCAM0292a | Universal stress protein | 202 |
BCAM0294a | Universal stress protein | 167 |
BCAM0307a | Phospholipid-binding protein | 89 |
BCAM0319a | Universal stress protein | 21 |
BCAM1495b | Universal stress protein | 55 |
BCAM1500 | Universal stress protein | 14 |
BCAM1829 | Universal stress protein | 44 |
Pentose turnover | ||
BCAL1657 | Ribose transport substrate-binding protein | 7.5 |
BCAL1658 | Ribose ABC transporter ATP-binding protein | 8.8 |
BCAL1659 | Ribose transport system, permease protein | 2.9 |
BCAL1660 | Ribose operon repressor | 3.1 |
BCAL1661 | Ribokinase | 8.9 |
BCAM0310a | Ribonucleotide reductase, class II | 15 |
BCAM0311a | Ribokinase | 89 |
Amino-acid turnover | ||
BCAL1796 | Saccharopine dehydrogenase | 152 |
BCAM0283a | Lysine decarboxylase | 20 |
BCAM1111 | Ornithine decarboxylase | 30 |
BCAM1112 | Biodegradative arginine decarboxylase | 20 |
BCAM1113 | Basic amino acid/polyamine antiporter | 18 |
Fatty acid, organic acid and alcohol turnover | ||
BCAM0286a | Alcohol dehydrogenase | 40 |
BCAM0293a | Acetate kinase | 75 |
BCAM0298a | Phosphate acetyl/butyryl transferase | 116 |
BCAM0299a | Zinc-binding alcoholdehydrogenase | 242 |
BCAM0312a | Polysaccharide deacetylase | 46 |
BCAM1570b | Alcohol dehydrogenase | 87 |
BCAM1581 | Phosphoenolpyruvate carboxykinase | 16 |
Storage polymer turnover | ||
BCAM0296a | Acetoacetyl-CoA reductase | 94 |
BCAM0297a | Polyhydroxyalkanoic acid synthase, class I | 224 |
BCAL1249b | Polyhydroxy butyrate depolymerase | 42 |
Electron transfer | ||
BCAL1830 | 2-Nitropropane dioxygenase | 66 |
BCAM0279a | Nitroreductase | 43 |
BCAM0284a | Cytochrome c551/c552 | 146 |
BCAM0320a | Cytochrome b561 | 3.5 |
Membrane/transport | ||
BCAM0281a | Sulphate transporter family protein | 19 |
BCAM0302a | ABC transporter protein | 3.8 |
BCAM0303a | ABC transporter protein | 80 |
BCAM0304a | Transporter system transport protein | 36 |
BCAM0305a | Outer membrane transport system protein | 58 |
BCAM0318a | Cation-transporting ATPase | 15 |
BCAM1571b | Ton-B-dependent receptor | 3.6 |
Transcription and translation | ||
BCAM0300 | Metal-dependent RNase | 30 |
BCAM0048 | LysR family regulatory protein | 13 |
BCAM0049 | CRP family regulatory protein, Anr-related | 77 |
BCAM0287a | CRP family regulatory protein, Anr-related | 17 |
BCAM0288a | Two-component regulatory system, response regulator | 3.7 |
BCAM0289a | Two-component regulatory system, sensor kinase | 2.6 |
BCAM0322a | Two-component regulatory system, response regulator | 3.8 |
BCAM0323a | Two-component regulatory system, sensor kinase | 2.1 |
BCAM1114 | LysR family regulatory protein | 6.5 |
BCAM1351 | Regulatory protein | 210 |
BCAM1483 | CRP family regulatory protein, Anr related | 3.5 |
BCAm1484 | Two-component regulatory system, response regulator protein | 2.5 |
BCAM1493b | Two-component regulatory system, response regulator protein | 3.2 |
BCAM1494b | Two-component regulatory system, sensor kinase protein | 3.0 |
Protein turnover | ||
BCAM0309a | ATP-dependent Zn protease | 130 |
Hypothetical | ||
BCAM1480-2b | Conserved hypothetical proteins | 27–53 |
BCAM1496b | Conserved hypothetical protein | 11 |