Table 4 B. cenocepacia lxa locus and other genes upregulated under low oxygen concentration growth conditions

From: The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia

Gene ID

Annotation

Fold change

Stress response

 BCAL1648

Universal stress protein

3.5

 BCAL2119

Universal stress protein

3.0

 BCAM0050

Universal stress protein

16

BCAM0276a

Universal stress protein

59

BCAM0278a

Small heat shock/α-crystallin protein

240

BCAM0280a

Phospholipid-binding protein

221

BCAM0290a

Universal stress protein

105

BCAM0291a

Universal stress protein

165

BCAM0292a

Universal stress protein

202

BCAM0294a

Universal stress protein

167

BCAM0307a

Phospholipid-binding protein

89

BCAM0319a

Universal stress protein

21

 BCAM1495b

Universal stress protein

55

 BCAM1500

Universal stress protein

14

 BCAM1829

Universal stress protein

44

Pentose turnover

 BCAL1657

Ribose transport substrate-binding protein

7.5

 BCAL1658

Ribose ABC transporter ATP-binding protein

8.8

 BCAL1659

Ribose transport system, permease protein

2.9

 BCAL1660

Ribose operon repressor

3.1

 BCAL1661

Ribokinase

8.9

BCAM0310a

Ribonucleotide reductase, class II

15

BCAM0311a

Ribokinase

89

Amino-acid turnover

 BCAL1796

Saccharopine dehydrogenase

152

BCAM0283a

Lysine decarboxylase

20

 BCAM1111

Ornithine decarboxylase

30

 BCAM1112

Biodegradative arginine decarboxylase

20

 BCAM1113

Basic amino acid/polyamine antiporter

18

Fatty acid, organic acid and alcohol turnover

BCAM0286a

Alcohol dehydrogenase

40

BCAM0293a

Acetate kinase

75

BCAM0298a

Phosphate acetyl/butyryl transferase

116

BCAM0299a

Zinc-binding alcoholdehydrogenase

242

BCAM0312a

Polysaccharide deacetylase

46

 BCAM1570b

Alcohol dehydrogenase

87

 BCAM1581

Phosphoenolpyruvate carboxykinase

16

Storage polymer turnover

BCAM0296a

Acetoacetyl-CoA reductase

94

BCAM0297a

Polyhydroxyalkanoic acid synthase, class I

224

 BCAL1249b

Polyhydroxy butyrate depolymerase

42

Electron transfer

 BCAL1830

2-Nitropropane dioxygenase

66

BCAM0279a

Nitroreductase

43

BCAM0284a

Cytochrome c551/c552

146

BCAM0320a

Cytochrome b561

3.5

Membrane/transport

BCAM0281a

Sulphate transporter family protein

19

BCAM0302a

ABC transporter protein

3.8

BCAM0303a

ABC transporter protein

80

BCAM0304a

Transporter system transport protein

36

BCAM0305a

Outer membrane transport system protein

58

BCAM0318a

Cation-transporting ATPase

15

 BCAM1571b

Ton-B-dependent receptor

3.6

Transcription and translation

 BCAM0300

Metal-dependent RNase

30

 BCAM0048

LysR family regulatory protein

13

 BCAM0049

CRP family regulatory protein, Anr-related

77

BCAM0287a

CRP family regulatory protein, Anr-related

17

BCAM0288a

Two-component regulatory system, response regulator

3.7

BCAM0289a

Two-component regulatory system, sensor kinase

2.6

BCAM0322a

Two-component regulatory system, response regulator

3.8

BCAM0323a

Two-component regulatory system, sensor kinase

2.1

 BCAM1114

LysR family regulatory protein

6.5

 BCAM1351

Regulatory protein

210

 BCAM1483

CRP family regulatory protein, Anr related

3.5

 BCAm1484

Two-component regulatory system, response regulator protein

2.5

 BCAM1493b

Two-component regulatory system, response regulator protein

3.2

 BCAM1494b

Two-component regulatory system, sensor kinase protein

3.0

Protein turnover

BCAM0309a

ATP-dependent Zn protease

130

Hypothetical

 BCAM1480-2b

Conserved hypothetical proteins

27–53

 BCAM1496b

Conserved hypothetical protein

11

  1. alxa locus gene.
  2. bCo-regulated gene with a lxa motif sequence.