Table 1 Host-specific oligotypes and their V6 tag sequences.

Source	Oligotype	Representative V6 Tag	Average % abundance	Total no. of reads	Average no. of reads per sample
Human	AACCTCGGACCCGTCCCCTTAGGA	AAATCTTGACATCCCTCTGACCGGGACTTAACCGTCCCCTTTCTTCGGAACAGAGGAGAC	0.0859	9,874	987
Human	AGCCTCGTCTTCGGACCTCTAGGT	AAGTCTTGACATCCCTCTGACCGGTCTTTAATCGGACCTTCTCTTCGGAGCAGAGGTGAC	0.0038	446	45
Human	AGCCTGACTCCCGAGTCTTCAGGA	AAGTCTTGACATCCCTCTGACGGACTCTTAACCGAGTCTTTCCTTCGGGACAGAGGAGAC	0.0088	1,019	47
Swine	AGCGGCGGACCCGTCCCTCCCCGA	AAGTCTTGACATCCGGATGACCGGGACTTAACCGTCCCTTCCCTTCGGGGCATCCGAGAC	0.0130	2,022	168
Swine	AGCGGATCCTCCGGGACTCCCCGA	AAGTCTTGACATCCGGATGACAGTCCTTTAACCGGGACTTCCCTTCGGGGCATCCGAGAC	0.0127	1,980	165
Swine	AGCCTCGGGCCCGCCCCTTCAGGA	AAGTCTTGACATCCCTCTGACCGGGGCTTAACCGCCCCTTTCCTTCGGGACAGAGGAGAC	0.0092	1,433	119
Swine	AGCCTCGGGCCCGTCCCTTCAGGA	AAGTCTTGACATCCCTCTGACCGGGGCTTAACCGTCCCTTTCCTTCGGGACAGAGGAGAC	0.0048	758	63
Swine	AGCGGCGCCGCGCGGCCTCCCCGA	AAGTCTTGACATCCGGATGACCGGCCGGTAACGCGGCCTTCCCTTCGGGGCATCCGAGAC	0.0029	452	38
Swine	AGCCTTATCCCGGGATCTTCAGGA	AAGTCTTGACATCCCTCTGACTGATCCGTAACGGGATCTTTCCTTCGGGACAGAGGAGAC	0.0015	239	20
Cow	GGCCTCTTCCCCGGAACTTCAGGT	AGGACTTGACATCCCTCTGACCGTTCCTTAACCGGAACTTTCCTTCGGGACAGAGGTGAC	0.0545	3,794	421
Deer	AGCCGCGAACCGGTTCCTCTCGGA	AAGTCTTGACATCCCGATGACCGGAACGTAACGGTTCCTTCTCTTCGGAGCATCGGAGAC	0.0232	1,492	186
Chicken	AGCCTCTTCTCCGGAACTTCAGGA	AAGTCTTGACATCCCTCTGACCGTTCTTTAACCGGAACTTTCCTTCGGGACAGAGGAGAC	0.0133	610	68
Chicken	AGCCTCCGCCCCGGCGCTTCAGGA	AAGTCTTGACATCCCTCTGACCGCGCCTTAACCGGCGCTTTCCTTCGGGACAGAGGAGAC	0.0031	142	16

Average percent abundance column lists the average relative abundance of each oligotype among the source host. Total number of reads column shows the size of the oligotype.

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