Table 1 List of organisms screened for fatty acid synthesis enzymes in marine microbial eukaryotes
From: Evolutionary distinctiveness of fatty acid and polyketide synthesis in eukaryotes
Organism | Total number screened (libraries, strains, genera) |
---|---|
Positive libraries | |
Alveolates | |
Dinoflagellates: Alexandrium andersonii (CCMP2222-1); Alexandrium fundayense (38/3-1); Alexandrium margalefi (CS322-1); Alexandrium monilatum (CCMP3105-4a); Alexandrium ostenfeldii (OF101-1); Alexandrium pacificum (CCMP1598-1); Alexandrium tamarense (CCMP1771-4a); Alexandrium tamarense (ATSP1B-1); Amphidinium carterae (CCMP1314-3a); Azadinium spinosum (3D9-3a); Brandtodinium nutriculum (RCC3387-1); Ceratium fusus (PA161109-2a); Durinskia baltica (CS/38-2a); Gambierdiscus australes (CAWD149-1); Gambierdiscus belizeanus (CCMP401-1); Glenodinium foliaceum (CCAP1116-2a); Gonyaulax spinifera (CCMP409-1); Gymnodinium catenatum (GC744-1); Heterocapsa arctica (CCMP445-1); Heterocapsa rotundata (SCCAPK/0483-1); Heterocapsa triquestra (CCMP448-1); Karenia brevis (CCMP2229-4a; Wilson-4a; SP3-2a; SP1-2a); Karlodinium micrum (CCMP2283-3a); Kruptoperidinium foliaceum (CCMP1326-2a); Lingulodinium polyerda (CCMP1738-4a); Pelagodinium beii (RCC1491-1); Peridinium aciculiferum (PEAR2-2a); Polarella glacialis (CCMP1383-1); Prorocentrum minimum (CCMP2233-3a); Protoceratium reticulatum (CCMP535-1); Pyrodinium bahamense (PBAHA01-1); Scrippsiella hangoei (SHTV5-3a); Scrippsiella hangoei like (SHHI4-3a); Scrippsiella trochoidea (CCMP3099-3a); Symbiodinium spp (CladeA-1; Ccmp421-4a; CassKb8-1; C1-2a; C15-2a; CCMP2430-3a; D1A-1; MP-4a; Togula jolla (CCCM725-1) Apicomplexa: Eimeria falciformis (Bayer/Haberkorn /970-1); Eimeria tenella (Houghton-1); Neospora caninum (Liverpool-1); Toxoplasma gondii (GT1-1) Others: Vitrella brassicaformis-CCMP3346-1); Chromera velia (CCMP2878-1) | Dinoflagellates (92, 46, 24); Apicomplexa (4, 4, 3); Others (2, 2, 2) |
Stramenopiles | |
Bacillariophytes: Amphiprora sp. (CCMP467-4a); Amphora coffeaeformis (CCMP127-3a); Asterionellopsis glacialis (CCMP134-4a); Attheya septentrionalis (CCMP2084-1); Aulacoseira subarctica (CCAP1002/5-1); Chaetoceros affinis (CCMP159-4a); Chaetoceros curvisetus (NK^-4a); Chaetoceros debilis (MM31A/1-2a); Chaetoceros neogracile (CCMP1317-4a); Corethron pennatum (L29A3-2a); Coscinodiscus wailesii (CCMP2513-1); Cyclophora tenuis (ECT3854-1); Cyclotella meneghiniana (CCMP338-1); Cylindrotheca closterium (KMMCC/B181-1); Dactyliosolen fragilissimus (NK^-1); Detonula confervacea (CCMP353-1); Ditylum brightwellii (GSO103-2a;GSO105-2a; GSO104-3a); Entomoneis sp (CCMP2396-1); Eucampia antarctica (CCMP1452-1); Extubocellulus spinifer (CCMP396-4a); Fragilariopsis kerguelensis (L26/C3-4a; L26/C5-4a); Grammatophora oceanica (CCMP410-1); Helicotheca tamensis (CCMP826-1); Leptocylindrus danicus (B650-1); Licmophora paradoxa (CCMP2313-1); Minutocellus polymorphus (RCC2270-1); Nitzschia punctata (CCMP561-4a); Odontella aurita (1302/5-1); Proboscia alata (P1/D3-1); Pseudo-nitzschia australis (10249/10/AB-4a); Rhizosolenia setigera (CCMP1694-1); Skeletonema dohrnii (SkelB-2a); Skeletonema marinoi (skelA-2a); Skeletonema menzelii (CCMP793-2a); Stephanopyxis turris (CCMP815-1); Striatella unipunctata (CCMP2910-1); Synedropsis recta (CCMP1620-1); Thalassionema nitzschioides (L26/B-2a); Thalassiosira antarctica (CCMP982-4a); Thalassiosira gravida (GMp14c1-3a); Thalassiosira miniscula (CCMP1093-4a); Thalassiosira oceanica (CCMP1005-4a); Thalassiosira rotula (GSO102-4a); Thalassiosira rotula (CCMP3096-2a); Thalassiosira weissflogii (CCMP1336-4a); Thalassiothrix antarctica (L6/D1-2a); Triceratium dubium (CCMP147-1) Bolidophytes: Bolidomonas pacifica (CCMP1866-1); Bolidomonas sp. (RCC2347-1) Chrysophytes: Chromulina nebulosa (UTEXLB2642-1) Pelagophytes: Aureococcus anophagefferens (CCMP1850-4a); Aureoumbra lagunensis (CCMP1510-4a); Pelagomonas calceolata (CCMP1756-4a) Raphidophytes: Chattonella subsalsa (CCMP2191-4a); Heterosigma akashiwo (CCMP452-4a; CCMP2393-4a; CCMP3107-3a; NB-3a) Synurophytes: Dinobryon sp (UTEXLB2267-3a); Ochromonas sp (CCMP1393-2a) Dictyochophytes: Pseudopedinella elastica (CCMP716-2a); Chrysocystis fragilis (CCMP3189-1); Dictyocha speculum (CCMP1381-1); Florenciella parvula (CCMP2471-1); Florenciella sp (RCC1587-1); Pinguiococcus pyrenoidosus (CCMP2078-1); Rhizochromulina marina (CCMP1243-1) Pinguiophytes: Phaeomonas parva (CCMP2877-1) Xanthophytes: Vaucheria litorea (CCMP2940-2a) | Bacillariophytes (111, 50, 36); Bolidophytes (2, 2, 1); Chrysophytes (1, 1, 1); Pelagophytes (12, 3, 3); Raphidophytes (18, 5, 2); Synurophytes (5, 2, 2); Dictyochophytes (8, 7, 6); Pinguiophytes (1, 1, 1); Xanthophytes (2, 1, 1) |
Rhizaria | |
Chlorarachniophyta: Bigelowiella longifila (CCMP242-1); Bigelowiella natans (CCMP623-1) Haplosporidia: Chlorarachnion reptans (CCCM449-1); Gymnochlora sp (CCMP2014-1); Lotharella amoebiformis (CCMP2058-1); Lotharella oceanica (CCMP622-1); Lotharella globosa (CCCM811-2a); Partenskyella glossopodia (RCC365-1) | Chlorarachniophyta (2, 2, 1); Haplosporidia (7, 6, 4) |
Cryptophytes | |
Cryptomonas curvata (CCAP979:52-1); Geminigera cryophila (CCMP2564-1); Guillardia theta (CCMP2712-1); Hanusia phi (CCMP325-1); Hemiselmis andersenii (CCMP644-1); Hemiselmis rufescens (PCC563-1); Proteomonas sulcata (CCMP704-1); Rhodomonas sp (CCMP768-2a) | Cryptophytes (9, 8, 7) |
Haptophytes | |
Calcidiscus leptoporus (RCC1130-1); Chrysochromulina brevifilum (UTEXLB985-1); Chrysochromulina polylepis (CCMP1757-4a); Chrysochromulina rotalis (UIO044-1); Chrysoculter rhomboideus (RCC1486-1); Coccolithus pelagicus (PLY182g-1); Emiliania huxleyi (PLYM219-4a; CCMP370-4a); Exanthemachrysis gayraliae (RCC1523-1); Gephyrocapsa oceanica (RCC1303-4a); Imantonia sp. (RCC918-1); Isochrysis sp. (CCMP1244-2a); Isochrysis galbana (CCMP1323-3a); Pavlova sp. (CCMP459-3a); Pavlova gyrans (CCMP608-1); Pavlova lutheri (RCC1537-1); Phaeocystis antarctica (CCMP1374-1); Phaeocystis cordata (RCC1383-1); Pleurochrysis carterae (CCMP645-3a); Prymnesium parvum (Texoma1-4a); Scyphosphaera apsteinii (RCC1455-1) | Haptophytes (43, 21, 14) |
Viridiplantae | |
Chlorophyceans: Chlamydomonas euryale (CCMP219-1); Dunaliella tertiolecta (CCMP1320-3a); Polytomella parva (SAG63/3-1) Prasinophytes: Micromonas sp. (NEPCC29-1); Micromonas sp. (CCMP2099-2a); Pyramimonas parkeae (CCMP726-2a); Tetraselmis striata (LANL1001-4a) Trebouxiophytes: Picocystis salinarum (CCMP1897-2a) | Chlorophyceans (5, 3, 3) Prasinophytes (9, 4, 3) Trebouxiophytes (2, 1, 1) |
Excavates | |
Euglenids: Eutreptiella gymnastica (CCMP1594-3a) | Euglenids (3, 1, 1) |
Negative libraries | |
Alveolates | |
Ciliates: Anophryoides haemophila (AH6-1); Aristerostoma sp (atcc50986-1); Blepharisma japonicum (StockR1072-1); Climacostomum virens (StockW/24-1); Condylostoma magnum (COL2-1); Fabrea salina (NK^-1); Favella ehrenbergii (fehre1-1); Favella taraikaensis (FeNarragansettB-2a); Litonotus pictus (P1-1); Platyophrya macrostoma (wh-1); Protocruzia adherens (Boccale-1); Pseudokeronopsis sp (Brazil-1; OXSARD2-1); Strombidium inclinatum (s3-1); Uronema sp (bbcil-1); Strombidinopsis sp (SopsisLIS2011-1) Dinoflagellates: Oxyrrhis marina (LB1974-3a), Oxyrrhis marina (NK^-4a) | Ciliates (17, 16, 14); Dinoflagellates (7, 2, 1) |
Stramenopiles | |
Bicosoecids: Bicosoecid sp (ms1-1); Cafeteria roenbergensis (E410-1); Cafeteria sp (Caron-1) Labyrinthulids & Thraustochytrids: Aplanochytrium sp (PBS07-4a); Aplanochytrium stocchinoi (GSBS06-4a); Aurantiochytrium limacinum (ATCCMYA1381-4a); Schizochytrium aggregatum (ATCC28209-4a); Thraustochytrium sp (LLF1b-2a) Chrysophytes: Paraphysomonas vestita (GFlagA-1); Spumella elongata (CCAP955-1); Paraphysomonas bandaiensis (Caron-1) | Bicosoecids (3, 3, 2); Labyrinthulids & Thraustochytrids (18, 5, 3); Chrysophytes (3, 3, 2) |
Rhizaria | |
Foraminifera: Ammonia sp (NK^-1); Elphidium margaritaceum (NK^-1); Rosalina sp (NK^-1); Sorites sp (NK^-1) | Foraminifera (4, 4, 4) |
Amoebozoa | |
Tubulinids: Filamoeba nolandi (NCAS231-1) Dactylopodids: Mayorella sp (BSH0219019-1); Neoparamoeba aestuarina (SoJaBio-1); Paramoeba atlantica (CCAP15609-1); Vexillifera sp (DIVA3/564-1) | Tubulinids: (1, 1, 1); Dactylopodids (4, 4, 4) |
Excavates | |
Kinetoplastids: Neobodo designis (CCAP1951-1) | Kinetoplastids (1, 1, 1) |
Opisthokonts | |
Choanoflagellates: Acanthoeca like sp. (10tr-2a) | Choanoflagellates (2, 1, 1) |
Others | |
Glaucophytes: Cyanoptyche gloeocystis (SAG497-1); Gloeochaete witrockiana (SAG4684-2a) Palpitomonas: Palpitomonas bilix (NIES2562-1) | Glaucophytes (3, 2, 2); Palpitomonas (1, 1, 1) |
Total | (402, 213, 152) |