Table 1 List of organisms screened for fatty acid synthesis enzymes in marine microbial eukaryotes

From: Evolutionary distinctiveness of fatty acid and polyketide synthesis in eukaryotes

Organism

Total number screened (libraries, strains, genera)

Positive libraries

 Alveolates

 

Dinoflagellates: Alexandrium andersonii (CCMP2222-1); Alexandrium fundayense (38/3-1); Alexandrium margalefi (CS322-1); Alexandrium monilatum (CCMP3105-4a); Alexandrium ostenfeldii (OF101-1); Alexandrium pacificum (CCMP1598-1); Alexandrium tamarense (CCMP1771-4a); Alexandrium tamarense (ATSP1B-1); Amphidinium carterae (CCMP1314-3a); Azadinium spinosum (3D9-3a); Brandtodinium nutriculum (RCC3387-1); Ceratium fusus (PA161109-2a); Durinskia baltica (CS/38-2a); Gambierdiscus australes (CAWD149-1); Gambierdiscus belizeanus (CCMP401-1); Glenodinium foliaceum (CCAP1116-2a); Gonyaulax spinifera (CCMP409-1); Gymnodinium catenatum (GC744-1); Heterocapsa arctica (CCMP445-1); Heterocapsa rotundata (SCCAPK/0483-1); Heterocapsa triquestra (CCMP448-1); Karenia brevis (CCMP2229-4a; Wilson-4a; SP3-2a; SP1-2a); Karlodinium micrum (CCMP2283-3a); Kruptoperidinium foliaceum (CCMP1326-2a); Lingulodinium polyerda (CCMP1738-4a); Pelagodinium beii (RCC1491-1); Peridinium aciculiferum (PEAR2-2a); Polarella glacialis (CCMP1383-1); Prorocentrum minimum (CCMP2233-3a); Protoceratium reticulatum (CCMP535-1); Pyrodinium bahamense (PBAHA01-1); Scrippsiella hangoei (SHTV5-3a); Scrippsiella hangoei like (SHHI4-3a); Scrippsiella trochoidea (CCMP3099-3a); Symbiodinium spp (CladeA-1; Ccmp421-4a; CassKb8-1; C1-2a; C15-2a; CCMP2430-3a; D1A-1; MP-4a; Togula jolla (CCCM725-1)

Apicomplexa: Eimeria falciformis (Bayer/Haberkorn /970-1); Eimeria tenella (Houghton-1); Neospora caninum (Liverpool-1); Toxoplasma gondii (GT1-1)

Others: Vitrella brassicaformis-CCMP3346-1); Chromera velia (CCMP2878-1)

Dinoflagellates (92, 46, 24);

Apicomplexa (4, 4, 3); Others (2, 2, 2)

 Stramenopiles

 

Bacillariophytes: Amphiprora sp. (CCMP467-4a); Amphora coffeaeformis (CCMP127-3a); Asterionellopsis glacialis (CCMP134-4a); Attheya septentrionalis (CCMP2084-1); Aulacoseira subarctica (CCAP1002/5-1); Chaetoceros affinis (CCMP159-4a); Chaetoceros curvisetus (NK^-4a); Chaetoceros debilis (MM31A/1-2a); Chaetoceros neogracile (CCMP1317-4a); Corethron pennatum (L29A3-2a); Coscinodiscus wailesii (CCMP2513-1); Cyclophora tenuis (ECT3854-1); Cyclotella meneghiniana (CCMP338-1); Cylindrotheca closterium (KMMCC/B181-1); Dactyliosolen fragilissimus (NK^-1); Detonula confervacea (CCMP353-1); Ditylum brightwellii (GSO103-2a;GSO105-2a; GSO104-3a); Entomoneis sp (CCMP2396-1); Eucampia antarctica (CCMP1452-1); Extubocellulus spinifer (CCMP396-4a); Fragilariopsis kerguelensis (L26/C3-4a; L26/C5-4a); Grammatophora oceanica (CCMP410-1); Helicotheca tamensis (CCMP826-1); Leptocylindrus danicus (B650-1); Licmophora paradoxa (CCMP2313-1); Minutocellus polymorphus (RCC2270-1); Nitzschia punctata (CCMP561-4a); Odontella aurita (1302/5-1); Proboscia alata (P1/D3-1); Pseudo-nitzschia australis (10249/10/AB-4a); Rhizosolenia setigera (CCMP1694-1); Skeletonema dohrnii (SkelB-2a); Skeletonema marinoi (skelA-2a); Skeletonema menzelii (CCMP793-2a); Stephanopyxis turris (CCMP815-1); Striatella unipunctata (CCMP2910-1); Synedropsis recta (CCMP1620-1); Thalassionema nitzschioides (L26/B-2a); Thalassiosira antarctica (CCMP982-4a); Thalassiosira gravida (GMp14c1-3a); Thalassiosira miniscula (CCMP1093-4a); Thalassiosira oceanica (CCMP1005-4a); Thalassiosira rotula (GSO102-4a); Thalassiosira rotula (CCMP3096-2a); Thalassiosira weissflogii (CCMP1336-4a); Thalassiothrix antarctica (L6/D1-2a); Triceratium dubium (CCMP147-1)

Bolidophytes: Bolidomonas pacifica (CCMP1866-1); Bolidomonas sp. (RCC2347-1)

Chrysophytes: Chromulina nebulosa (UTEXLB2642-1)

Pelagophytes: Aureococcus anophagefferens (CCMP1850-4a); Aureoumbra lagunensis (CCMP1510-4a); Pelagomonas calceolata (CCMP1756-4a)

Raphidophytes: Chattonella subsalsa (CCMP2191-4a); Heterosigma akashiwo (CCMP452-4a; CCMP2393-4a; CCMP3107-3a; NB-3a)

Synurophytes: Dinobryon sp (UTEXLB2267-3a); Ochromonas sp (CCMP1393-2a)

Dictyochophytes: Pseudopedinella elastica (CCMP716-2a); Chrysocystis fragilis (CCMP3189-1); Dictyocha speculum (CCMP1381-1); Florenciella parvula (CCMP2471-1); Florenciella sp (RCC1587-1); Pinguiococcus pyrenoidosus (CCMP2078-1); Rhizochromulina marina (CCMP1243-1)

Pinguiophytes: Phaeomonas parva (CCMP2877-1)

Xanthophytes: Vaucheria litorea (CCMP2940-2a)

Bacillariophytes (111, 50, 36); Bolidophytes (2, 2, 1); Chrysophytes (1, 1, 1); Pelagophytes (12, 3, 3); Raphidophytes (18, 5, 2); Synurophytes (5, 2, 2); Dictyochophytes (8, 7, 6); Pinguiophytes (1, 1, 1); Xanthophytes (2, 1, 1)

 Rhizaria

 

Chlorarachniophyta: Bigelowiella longifila (CCMP242-1); Bigelowiella natans (CCMP623-1)

Haplosporidia: Chlorarachnion reptans (CCCM449-1); Gymnochlora sp (CCMP2014-1); Lotharella amoebiformis (CCMP2058-1); Lotharella oceanica (CCMP622-1); Lotharella globosa (CCCM811-2a); Partenskyella glossopodia (RCC365-1)

Chlorarachniophyta (2, 2, 1); Haplosporidia (7, 6, 4)

 Cryptophytes

 

Cryptomonas curvata (CCAP979:52-1); Geminigera cryophila (CCMP2564-1);  Guillardia theta (CCMP2712-1); Hanusia phi (CCMP325-1); Hemiselmis andersenii (CCMP644-1); Hemiselmis rufescens (PCC563-1); Proteomonas sulcata (CCMP704-1); Rhodomonas sp (CCMP768-2a)

Cryptophytes (9, 8, 7)

 Haptophytes

 

Calcidiscus leptoporus (RCC1130-1); Chrysochromulina brevifilum (UTEXLB985-1); Chrysochromulina polylepis (CCMP1757-4a); Chrysochromulina rotalis (UIO044-1); Chrysoculter rhomboideus (RCC1486-1); Coccolithus pelagicus (PLY182g-1); Emiliania huxleyi (PLYM219-4a; CCMP370-4a); Exanthemachrysis gayraliae (RCC1523-1); Gephyrocapsa oceanica (RCC1303-4a); Imantonia sp. (RCC918-1); Isochrysis sp. (CCMP1244-2a); Isochrysis galbana (CCMP1323-3a); Pavlova sp. (CCMP459-3a); Pavlova gyrans (CCMP608-1); Pavlova lutheri (RCC1537-1); Phaeocystis antarctica (CCMP1374-1); Phaeocystis cordata (RCC1383-1); Pleurochrysis carterae (CCMP645-3a); Prymnesium parvum (Texoma1-4a); Scyphosphaera apsteinii (RCC1455-1)

Haptophytes (43, 21, 14)

 Viridiplantae

 

Chlorophyceans: Chlamydomonas euryale (CCMP219-1); Dunaliella tertiolecta (CCMP1320-3a); Polytomella parva (SAG63/3-1)

Prasinophytes: Micromonas sp. (NEPCC29-1); Micromonas sp. (CCMP2099-2a); Pyramimonas parkeae (CCMP726-2a); Tetraselmis striata (LANL1001-4a)

Trebouxiophytes: Picocystis salinarum (CCMP1897-2a)

Chlorophyceans (5, 3, 3) Prasinophytes (9, 4, 3) Trebouxiophytes (2, 1, 1)

 Excavates

 

Euglenids: Eutreptiella gymnastica (CCMP1594-3a)

Euglenids (3, 1, 1)

Negative libraries

 Alveolates

Ciliates: Anophryoides haemophila (AH6-1); Aristerostoma sp (atcc50986-1); Blepharisma japonicum (StockR1072-1); Climacostomum virens (StockW/24-1); Condylostoma magnum (COL2-1); Fabrea salina (NK^-1); Favella ehrenbergii (fehre1-1); Favella taraikaensis (FeNarragansettB-2a); Litonotus pictus (P1-1); Platyophrya macrostoma (wh-1); Protocruzia adherens (Boccale-1); Pseudokeronopsis sp (Brazil-1; OXSARD2-1); Strombidium inclinatum (s3-1); Uronema sp (bbcil-1); Strombidinopsis sp (SopsisLIS2011-1)

Dinoflagellates: Oxyrrhis marina (LB1974-3a), Oxyrrhis marina (NK^-4a)

Ciliates (17, 16, 14); Dinoflagellates (7, 2, 1)

 Stramenopiles

Bicosoecids: Bicosoecid sp (ms1-1); Cafeteria roenbergensis (E410-1); Cafeteria sp (Caron-1)

Labyrinthulids & Thraustochytrids: Aplanochytrium sp (PBS07-4a); Aplanochytrium stocchinoi (GSBS06-4a); Aurantiochytrium limacinum (ATCCMYA1381-4a); Schizochytrium aggregatum (ATCC28209-4a); Thraustochytrium sp (LLF1b-2a)

Chrysophytes: Paraphysomonas vestita (GFlagA-1); Spumella elongata (CCAP955-1); Paraphysomonas bandaiensis (Caron-1)

Bicosoecids (3, 3, 2); Labyrinthulids & Thraustochytrids (18, 5, 3); Chrysophytes (3, 3, 2)

 Rhizaria

Foraminifera: Ammonia sp (NK^-1); Elphidium margaritaceum (NK^-1); Rosalina sp (NK^-1); Sorites sp (NK^-1)

Foraminifera (4, 4, 4)

 Amoebozoa

Tubulinids: Filamoeba nolandi (NCAS231-1)

Dactylopodids: Mayorella sp (BSH0219019-1); Neoparamoeba aestuarina (SoJaBio-1); Paramoeba atlantica (CCAP15609-1); Vexillifera sp (DIVA3/564-1)

Tubulinids: (1, 1, 1); Dactylopodids (4, 4, 4)

 Excavates

Kinetoplastids: Neobodo designis (CCAP1951-1)

Kinetoplastids (1, 1, 1)

 Opisthokonts

Choanoflagellates: Acanthoeca like sp. (10tr-2a)

Choanoflagellates (2, 1, 1)

 Others

Glaucophytes: Cyanoptyche gloeocystis (SAG497-1); Gloeochaete witrockiana (SAG4684-2a)

Palpitomonas: Palpitomonas bilix (NIES2562-1)

Glaucophytes (3, 2, 2); Palpitomonas (1, 1, 1)

Total

(402, 213, 152)

  1. Species names are followed by the strain number and then number of transcriptomic libraries screened for each strain. In strains where more than one library was available, a combined assembly of all the libraries constructed was used to search for type II fatty acid synthase genes.
  2. NK^- strain identity not known.
  3. aA combined assembly of all the libraries constructed was used to search for fatty acid synthase genes.