Table 1 Summary of the validation of Euo target sites from ChIP-Seq by EMSA
From: Regulatory (pan-)genome of an obligate intracellular pathogen in the PVC superphylum
Gene | Predicted function | Synonym | Shift |
|---|---|---|---|
wcw_0093 | Flagellar biosynthesis pathway, component FliP | sctR | ++++ |
wcw_0203 | Histone H1-like protein Hc1 | hctA | – |
wcw_0354 | N-acetylmuramoyl-l-alanine amidase | amiA | +++ |
wcw_0365 | Enzyme related to GTP cyclohydrolase I | queF | ++++ |
wcw_0390 | Rhs family protein | rhs9 | ++++ |
wcw_0423 | Signal recognition particle GTPase | ftsY | +++ |
wcw_0430 | NADH dehydrogenase, FAD-containing subunit | ndh | ++++ |
wcw_0544 | Integrase | wcw_0544 | – |
wcw_0547 | Transposase | wcw_0547 | + |
wcw_0592 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | rpoB | +++ |
wcw_0655 | Catalase | katA | ++++ |
wcw_0685 | ATP-dependent Zn proteases | ftsH | + |
wcw_1215 | Outer membrane protein | + | |
wcw_1315 | Hypothetical protein | OmpA9 | ++ |
wcw_1386 | UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase | murG | + |
wcw_1561 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit | parC | ++ |
wcw_1636 | Transcriptional regulator of heat shock gene | hrcA | ++++ |
wcw_1705 | Predicted ATPase or kinase | wcw_1705 | +++ |
wcw_1731 | Na+/H+-dicarboxylate symporters | gltT | ++++ |
wcw_1924 | Secreted protein | ++++ | |
wcw_1931 | Cell division protein FtsI/penicillin-binding protein 2 | ftsI | +++ |
