Table 2 Mutations of the S. oneidensis at 4 °C identified by whole-genome deep-sequencing
From: Cold adaptation regulated by cryptic prophage excision in Shewanella oneidensis
ID | GenBank ID | Gene product | Genome position | Change in DNA | Change in protein or RNA | Frequency |
|---|---|---|---|---|---|---|
M1 | SO_0673 | Mu phage uncharacterized protein | 691074 | 156 (T→G) | 52 (I→M) | 0.24 |
M2 | SO_m003 | tmRNA (SsrA) | 1538151 | 349 | Deletion of U | 0.02 |
M3 | SO_2545 | Histidine kinase | 2679697 | 669 (C→T) | 224 (P→S) | 0.12 |
M4 | SO_2545 | Histidine kinase | 2679698 | 669 (A→G) | 223 (V→V) | 0.12 |
M5 | SO_2940 | Lambda phage tail fiber protein J | 3077206 | 3267 (G→A) | 1089 (Q→Q) | 0.19 |
M6 | SO_2940 | Lambda phage tail fiber protein J | 3077215 | 3258 (C→A) | 1086 (A→A) | 0.21 |
M7 | SO_2940 | Lambda phage tail fiber protein J | 3077236 | 3237 (A→C) | 1079 (A→A) | 0.17 |
M8 | SO_3735 | Peptidoglycan transglycosylase | 3879087 | 419 (C→A) | 140 (A→E) | 0.01 |
M9 | SO_3923 | Fe hydrogenase maturation rSAM protein | 4071260 | 1113 (T→C) | 371 (G→G) | 0.13 |
M10 | SO_4717 | Tungstate-responsive histidine kinase | 4921610 | 923 (C→G) | 308 (S→C) | 0.10 |
