Table 1 Genes and models used for phylogenetic analysis

From: Function-related replacement of bacterial siderophore pathways

Gene

Model

Partition

-lnL

p

BIC

TIGR00012

HKY+I

10 010

447, 7861

241

2210, 3046

TIGR00060

HKY+G

10 010

1087, 7826

241

3611, 5456

TIGR00064

GTR+I

12 345

4830, 304

245

11 392, 1013

TIGR00166

HKY+I

10 010

672, 6171

241

2710, 0077

TIGR00436

GTR+G

12 345

4045, 8933

245

9757, 282

TIGR00468

GTR+I

12 345

4002, 9428

245

9713, 7144

TIGR00496

GTR+G

12 345

2048, 4794

245

5645, 106

TIGR00631

HKY+G

10 010

9093, 5085

241

20 030, 593

TIGR00952

HKY+G

10 010

689, 3193

241

2725, 1656

TIGR01066

GTR+I

12 345

1055, 8994

245

3603, 6147

TIGR01164

HKY+I

10 010

897, 8683

241

3253, 1532

TIGR01308

HKY+I

10 010

423, 0226

241

2097, 5478

TIGR01455

GTR+G

12 345

5535, 952

245

12 838, 3735

TIGR02012

GTR+I+G

12 345

10 450, 698

246

22 893, 7369

NRPS16

HKY+I+G

10 010

32 670, 0197

56

65 880, 3644

  1. List of single copy genes used (TigrFam IDs) and associated model selection results from jmodeltest2. Models shown, HKY: Hasegawa–Kishino–Yano, GTR: general time reversible, G: gamma distribution, I: invariant sites. Parameters shown, BIC: Bayesian information criterion, -lnL: negative log likelihood, partition: substitution code of the model, p: number of model parameters (K).
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