Table 1 Taxonomic classification and characteristics for genome bins that were significantly enriched (P<0.01, log2 increase>2.0) in 13C-metagenomes relative to 12C-controls for both codigester sample sets

From: DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies

Genome bin I.D.

Taxonomy a

Assigned bin ‘Species’ name

Completeness b

GC

Size (Mbp)

Coding density b

Pulse-fed Codigester Genome Bins

 bin.15

Syntrophomonas

Syntrophomonas sp. PF15

47%

41.4%

1.21

86%

 bin.75

Syntrophomonas

Syntrophomonas sp. PF75

90%

41.2%

2.10

89%

 bin.62

Syntrophomonas

Syntrophomonas sp. PF62

97%

43.5%

2.66

87%

 bin.103

Syntrophomonas

Syntrophomonas sp. PF103

57%

44.6%

1.12

85%

 bin.36

Firmicutes

Firmicutes sp. PF36

85%

50.8%

1.60

90%

 bin.111

Syntrophomonas

Syntrophomonas sp. PF111

89%

45.7%

3.38

88%

 bin.7

Syntrophomonas

Syntrophomonas sp. PF07

74%

49.7%

1.27

89%

 bin.128

Syntrophomonadaceae

Syntrophomonadaceae sp. PF128

98%

46.4%

2.71

88%

Continuous-fed Codigester Genome Bins

 bin.22

Syntrophomonas

Syntrophomonas sp. CF22

74%

41.4%

2.00

86%

 bin.196

Syntrophomonas

Syntrophomonas sp. CF196

72%

42.9%

2.41

87%

 bin.226

Syntrophomonas

Syntrophomonas sp. CF226

98%

47.6%

3.18

88%

 bin.14

Syntrophomonas

Syntrophomonas sp. CF14

63%

49.7%

0.78

89%

 bin.263

Firmicutes

Firmicutes sp. CF263

83%

50.6%

4.81

92%

 bin.250

Candidatus Parcubacteria

Candidatus Parcubacteria sp. CF250

40%

30.8%

0.25

91%

 bin.187

Syntrophomonas

Syntrophomonas sp. CF187

86%

45.6%

2.12

89%

  1. Only genome bins that were above 40% completion are included.
  2. aBased on LCA of BLAST output.
  3. bBased on CheckM output.