Abstract
The BRIP1 gene encodes a helicase interacting with BRCA1, which contributes to BRCA1-associated DNA repair function. Germ-line BRIP1 mutations affecting the helicase domain activity have been identified in early onset breast cancer patients. In addition, BRIP1 was recently identified as deficient in Fanconi anemia (FA) complementation group J. Given the growing evidence now linking BRCA1, BRCA2, and the FA pathway, as well as the involvement of FA proteins (BRCA2/FANCD1 and PALB2/FANCN) in breast cancer susceptibility, we sought to evaluate the contribution of FANCJ gene alterations regarding breast cancer susceptibility among our cohort of 96 breast cancer individuals from high-risk non-BRCA1/2 French Canadian families. No deleterious mutation, exon deletion, or retention of intronic portions could be identified. However, extensive analysis of the promoter and whole exonic and flanking intronic regions of FANCJ led to the identification of 42 variants, including 22 novel variants not previously reported, four of which were located in the promoter region. Transcription factors analysis revealed a potential involvement of FANCJ promoter variants in regulation of FANCJ expression, and reporter gene assays were performed. The allelic frequency was assessed in a cohort of 73 unaffected French Canadian individuals, and haplotype analysis and tagging single nucleotide polymorphism (SNP) identification were also performed. Although our study unlikely involves FANCJ as a high-risk predisposition gene in non-BRCA1/2 high-risk French Canadian families, the possible association of FANCJ missense variants with phenotypes associated with FA, such as childhood cancer, cannot be excluded.
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Acknowledgments
The authors are indebted to the participants and their families for their generosity and providing DNA samples. We thank Dr. Damian Labuda and Claudia Moreau at the Centre de recherche de l’Hôpital Ste-Justine for providing control DNA samples. We would like to thank Dr. Martine Dumont, Dr. Penny Soucy, Gilles Leblanc, Carolle Samson, and Martine Tranchant for sample management, mutation screening, and skillful technical assistance, as well as Claire Brousseau, Marie-Andrée Lajoie, Pascale Léger, Hélène Malouin, and Josée Rhéaume, for genetic counselling and clinical data management at the Cancer Genomics Laboratory. A special thank to Mélanie Houde for skillful laboratory assistance. We thank Professor Bartha Maria Knoppers and her colleagues from the Centre de recherche en droit public de l’Université de Montréal for their valuable help with ELSI issues related to our research program. We also appreciate advice received from ethics committees. This work was supported by the Canadian Institutes of Health Research (CIHR) and Institute of Cancer and Institute of Gender and Health for the INHERIT BRCAs research program, the Fonds de la Recherche en Santé du Québec (FRSQ)/Réseau de Médecine Génétique Appliquée (RMGA), the Canadian Breast Cancer Research Alliance, the CURE Foundation, and the Canadian Fanconi Anemia Research Fund. FG is recipient of a studentship from Fondation René Bussières, JS is chairholder of the Canada Research Chair in Oncogenetics, and FD is a recipient of a chercheur boursier from the Fonds de la Recherche en Santé du Québec (FRSQ) and a Research Career Award in the Health Sciences from CIHR/Rx&D Health Research Foundation.
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Jacques Simard holds Canada Research Chair in Oncogenetics. Other members of INHERIT BRCAs involved in clinical aspects of this study are listed in the Appendix.
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Other members of INHERIT BRCAs involved in clinical aspects of this study:
Paul Bessette: Service de gynécologie, Centre Hospitalier Universitaire de Sherbrooke, Fleurimont, QC, J1H 5N4, Canada.
Jocelyne Chiquette: Clinique des maladies du sein Deschênes-Fabia, Hôpital du Saint-Sacrement, Québec, QC, G1S 4L8, Canada.
Rachel Laframboise: Service de médecine génétique, CHUQ, Pavillon CHUL, Québec, QC, G1V 4G2, Canada.
Jean Lépine: Centre Hospitalier régional de Rimouski, Rimouski, QC, G5L 5T1, Canada.
Bernard Lespérance, Roxane Pichette: Service d’hémato-oncologie, Hôpital du Sacré-Cœur, Montréal, QC, H4J 1C5, Canada.
Marie Plante: Service de gynécologie, CHUQ, L’Hôtel-Dieu de Québec, Québec, QC, G1R 2J6, Canada.
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Guénard, F., Labrie, Y., Ouellette, G. et al. Mutational analysis of the breast cancer susceptibility gene BRIP1/BACH1/FANCJ in high-risk non-BRCA1/BRCA2 breast cancer families. J Hum Genet 53, 579 (2008). https://doi.org/10.1007/s10038-008-0285-z
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DOI: https://doi.org/10.1007/s10038-008-0285-z
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