Table 1 Top 10 uniquely upregulated genes in our sarcoma samples (genes in bold have not been previously associated with sarcoma; full gene lists and mean expression values are available in Supplementary Tables 1–6)
Sarcoma | Gene symbol | Ratio |
|---|---|---|
Angiosarcoma | D21S2088E | 4566 |
CCL1 | 974 | |
HTN3 | 794 | |
GPR182 | 419 | |
MADCAM1 | 320 | |
FLT4 | 252 | |
SCGB3A1 | 238 | |
NTS | 76 | |
MMP12 | 61 | |
CTLA4 | 43 | |
Epithelioid sarcoma | CST5 | 3467 |
ARHGAP36 | 1822 | |
CDH10 | 1642 | |
TMEM215 | 598 | |
IGSF1 | 348 | |
ZCCHC12 | 288 | |
CST2 | 211 | |
GAL3ST3 | 189 | |
UNC5D | 181 | |
FOXL2NB | 149 | |
Ewing’s sarcoma | PCGEM1 | 12063 |
SLC17A8 | 4868 | |
SCNN1G | 1037 | |
C6orf15 | 578 | |
PGLYRP2 | 554 | |
CALCA | 546 | |
C1QL2 | 454 | |
LIPI | 275 | |
MAPT-AS1 | 258 | |
NKX2-2 | 229 | |
Fibromatosis | SERPINB11 | 981 |
LAMP5 | 76 | |
ADAM12 | 52 | |
POSTN | 43 | |
ADAMTS12 | 40 | |
XPNPEP2 | 35 | |
PLA2G2A | 35 | |
F2RL1 | 30 | |
ZNF469 | 23 | |
HMCN1 | 23 | |
Schwannoma | GJB6 | 2026 |
GFAP | 1124 | |
GAP43 | 340 | |
ANGPTL7 | 210 | |
SOX10 | 205 | |
GRIA4 | 174 | |
SERPINA5 | 134 | |
ITGB8 | 130 | |
S100B | 128 | |
FABP7 | 121 | |
Synovial sarcoma | C5orf58 | 122 |
SPATA22 | 113 | |
ZIC1 | 96 | |
FGF19 | 39 | |
GPR126 | 31 | |
ZIC4 | 29 | |
FAM163B | 29 | |
GFRA2 | 22 | |
DLX6-AS1 | 20 | |
HOXC11 | 19 |
