Table 3 Relative tumor hypomethylation of LINE-1 (difference between methylation levels of patient's nonneoplastic liver sample and tumor sample) and clinicopathologic characteristics
From: Hypomethylation of long interspersed nuclear element-1 in hepatocellular carcinomas
Variable | N | Tumor hypomethylation mean±standard deviation) | P-value |
|---|---|---|---|
Age a | |||
60 and younger | 12 | 11±12 | 0.2 |
More than 60 | 21 | 18±17 | |
Gender a | |||
Male | 21 | 18±18 | 0.2 |
Female | 12 | 11±11 | |
Country | |||
High risk | 24 | 24±13 | 0.02 |
Low risk | 33 | 15±16 | |
Cirrhosis a | |||
Absent | 24 | 17±17 | 0.5 |
Present | 31 | 20±13 | |
Hepatitis a | |||
Absent | 18 | 12±16 | 0.02 |
Present | 38 | 22±14 | |
Grade | |||
Well | 7 | 6±16 | 0.02 |
Moderate | 38 | 19±14 | |
Poor | 12 | 25±12 | |
Stage a | |||
1–2 | 8 | 17±18 | 0.5 |
3 and 4 | 23 | 13±15 | |
p53 gene a , b | |||
Wild type | 33 | 17±15 | 0.03 |
Mutated | 15 | 27±15 | |
p16 methylation b | |||
Absent | 32 | 16±13 | 0.1 |
Present | 25 | 23±17 | |
CAGNAIG methylation b | |||
Absent | 47 | 19±14 | 0.9 |
Present | 10 | 19±20 | |
ER methylation b | |||
Absent | 23 | 11±13 | 0.001 |
Present | 34 | 25±14 | |
COX-2 methylation b | |||
Absent | 48 | 22±14 | 0.003 |
Present | 9 | 6±13 | |
MINT31 methylation b | |||
Absent | 34 | 19±15 | 1.0 |
Present | 23 | 19±16 | |
MINT1 methylation b | |||
Absent | 43 | 21±15 | 0.2 |
Present | 14 | 15±15 | |
MINT2 methylation a , b | |||
Absent | 51 | 19±15 | 0.1 |
Present | 3 | 4±9 | |
MINT27 methylation b | |||
Absent | 50 | 19±16 | 0.9 |
Present | 7 | 19±13 | |
CIMP status b | |||
Negative | 9 | 7±11 | 0.04 |
Intermediate | 29 | 22±14 | |
Positive | 19 | 21±16 | |