Table 3 Comparison of mutant-to-wild-type-ratio by conventional PCR and COLD-PCR in formalin-fixed paraffin-embedded tissue samples
From: Application of COLD-PCR for improved detection of KRAS mutations in clinical samples
No. | Age | Sample type | Diagnosis | Mutation type | Nucleotide change | Tumor percentage a | Ratio by conventional PCR (%) | Ratio by COLD-PCR (%) | Enhancement by COLD- PCR (fold) |
---|---|---|---|---|---|---|---|---|---|
17 | 66 | Bladder | Colon cancer metastasis | G12D | GGT to GAT | 60 | 38.0 | 45.2 | 1.2 |
18 | 45 | Liver | Colon cancer metastasis | G12V | GGT to GTT | 30 | 20.2 | 40.0 | 2.0 |
19 | 54 | Colon | Colon cancer metastasis | G12A | GGT to GCT | 10 | 1.4 | 6.4 | 4.7 |
20 | 67 | Lymph node | Rectal cancer metastasis | G12V | GGT to GTT | 70 | 42.0 | 56.0 | 1.3 |
21 | 75 | Colon and rectum | Rectal cancer metastasis | G12D | GGT to GAT | 80 | 43.0 | 46.5 | 1.1 |
22 | 45 | Liver | Colon cancer metastasis | G12C | GGT to TGT | 80 | 53.2 | 53.7 | 1.0 |
23 | 77 | Colon | Colon cancer metastasis | G12V | GGT to GTT | 90 | 52.9 | 17.2 | 0.3 |
24 | 54 | Liver | Colon cancer metastasis | G12S | GGT to AGT | 80 | 48.0 | 46.3 | 1.0 |
25 | 46 | Lung | Colon cancer metastasis | G12D | GGT to GAT | 80 | 58.6 | 64.7 | 1.1 |
26 | 66 | Liver | Rectal cancer metastasis | G12D | GGT to GAT | 50 | 35.8 | 76.2 | 2.1 |
27 | 72 | Colon | Adenocarcinoma | G12D | GGT to GAT | 90 | 69.6 | 47.8 | 0.7 |
28 | 37 | Colon | Adenocarcinoma | G12V | GGT to GTT | 50 | 42.6 | 90.1 | 2.1 |
29 | 66 | Rectum | Adenocarcinoma of rectum | G12D | GGT to GAT | 5 | 17.2 | 45.7 | 2.7 |
30 | 76 | Colon | Adenocarcinoma | G13D | GGC to GAC | 50 | 43.3 | 56.1 | 1.3 |
31 | 76 | Rectum | Adenocarcinoma | G12R | GGT to CGT | 50 | 17.5 | 37.0 | 2.1 |
32 | 69 | Colon | Adenocarcinoma | G12V | GGT to GTT | 40 | 19.2 | 49.0 | 2.6 |
33 | 76 | Colon | Adenocarcinoma | G12V | GGT to GTT | 80 | 30.8 | 51.7 | 1.7 |
34 | 55 | Colon | Adenocarcinoma | G12V | GGT to GTT | 60 | 42.5 | 60.0 | 1.4 |
35 | 45 | Colon | Adenocarcinoma | G12D | GGT to GAT | 70 | 52.2 | 61.0 | 1.2 |
36 | 78 | Colon | Adenocarcinoma | G12D | GGT to GAT | 80 | 48.4 | 88.6 | 1.8 |