Table 1 Description of the FISH probes used to characterize MDM2, HMGA2, CDK4, and JUN amplification

BAC clone ^a	Locus	Chromosomal location ^a	Position ^a	Origin
RP11-797C20	MDM2	12q15	69 161 511–69 340 249	CHORI^b
RP11-30I11	Telomeric to 5′ region of HMGA2		65 892 238–66 063 441	CHORI^b
RP11-299L9	5′ Region and exons 1 and 2 of HMGA2		66 049 805–66 225 867	CHORI^b
RP11-23C9	5′ Region and exons 1, 2, and 3 of HMGA2	12q14.3	66 093 846–66 246 663	CHORI^b
CTC-782I9	Intron 3 and exon 4 of HMGA2		66 235 316–66 355 707	Invitrogen^c
CTD-2240K5	Exons 4 and 5 and 3′ region of HMGA2		66 325 027–66 457 979	Invitrogen^c
RP11-118B13	3′ Region of HMGA2		66 358 701–66 502 988	CHORI^b
RP11-571M6	CDK4	12q14.1	57 999 870–58 211 408	CHORI^b
RP11-63G10	JUN	1p32.1	59 246 463–59 249 785	CHORI^b

^ahttp://www.genome.ucsc.edu; UCSC Genome Browser on Human, February 2009.
^bCHORI: Children’s Hospital Oakland Research Institute (http://bacpac.chori.org/).
^cInvitrogen (Carlsbad, CA, USA).

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